Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c05
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF040647-7|AAB94996.2|  506|Caenorhabditis elegans Amino acid tr...    28   7.6  

>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +3

Query: 258 TVYEGLKFAKDILFSNLLLRFTIQFLPLPHNVRHSLSLITGVYLLYNNIGSAIFWTIGLT 437
           T  + +KF   + F+ +L+      +   H+V      ++   LL N + + IF  IG+ 
Sbjct: 46  TFNDNIKFLYIVYFTQILISVLNNCVVFAHHVVIPFLAVSKCDLLVNPVKNRIFQNIGVF 105

Query: 438 TGSYTMITVLSWTKSKRRSL 497
             S  M+T+L  T  +  +L
Sbjct: 106 GISCPMLTILGITAERLLAL 125


>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 566 ATDQRYSDDCCNEDYFCCNR-TG*KYI 643
           +TD  Y+ DC  E +F C R TG  YI
Sbjct: 338 STDHWYTVDCAEESWFLCKRSTGANYI 364


>Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical
           protein C08H9.10 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 384 YLLYNNIGSAIFWTIGLTTGSYTMITVLS 470
           Y+  +NIG    WTI    G +T++ V+S
Sbjct: 411 YVADHNIGGITMWTIDQDDGDHTLLKVVS 439


>Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical
           protein ZK938.6 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 384 YLLYNNIGSAIFWTIGLTTGSYTMITVLS 470
           Y+  +NIG    WTI    G +T++ V+S
Sbjct: 414 YVADHNIGGITMWTIDQDDGDHTLLKVVS 442


>AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical
           protein Y67A10A.1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 227 SIFGVNIFCIHLVKFFQNTKFSSIFEFSLSFHETF--HVVKNGT 102
           S+FG   F + L KF  N  F  +++FS+ F   F   + +NGT
Sbjct: 174 SVFGFIGFALILDKFAFNFMFLRLWQFSVGFSALFWSKIQENGT 217


>AF040647-7|AAB94996.2|  506|Caenorhabditis elegans Amino acid
           transporter protein 7 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +3

Query: 432 LTTGSYTMITVLSWTKSKRRSLFVSFTIITFLLLCEIYVLNPKMWQQIRG-IQMIA-AMK 605
           ++ G Y +  + SW        F+++ ++ F +L  + +LN    +++ G  Q++A A+K
Sbjct: 114 ISFGEYIVTGLDSWITIDENWRFMTYRLVGFSMLWPLMLLNFFSLKKVAGAFQIVATAIK 173

Query: 606 IISVAIELDRNIY 644
           +I  +I +   +Y
Sbjct: 174 LIVASIIIITGLY 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,442
Number of Sequences: 27780
Number of extensions: 341716
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)