Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c05
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.31 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.7  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   8.7  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   8.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +3

Query: 204 EDVYAENT-WTYLSMC-TEPTVYE--GLKFAKDILFSNLLLR 317
           +D+Y  NT W  + M  +E T+    GL F  D+L  N+LLR
Sbjct: 199 DDMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYNILLR 240


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 65  NYAINNLRHMLCRYRSSLHEMFHENLKKIQK 157
           NY  +N  +    Y ++ +  ++ N KK+ K
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 65  NYAINNLRHMLCRYRSSLHEMFHENLKKIQK 157
           NY  +N  +    Y ++ +  ++ N KK+ K
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 634 EIYTITSSXQLNMEVIF 684
           EIY I +S QLN   +F
Sbjct: 18  EIYNIIASPQLNNPTLF 34


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = +3

Query: 165 KLCVLKKFDKMDAEDVYAENTWTYLSM 245
           K CV+K+ + +   ++Y E  +  + +
Sbjct: 70  KACVMKRIEMLKGTELYVEPVYKMIEV 96


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = +3

Query: 165 KLCVLKKFDKMDAEDVYAENTWTYLSM 245
           K CV+K+ + +   ++Y E  +  + +
Sbjct: 70  KACVMKRIEMLKGTELYVEPVYKMIEV 96


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -1

Query: 683 NITSIFNWXEDVXVYISIQFYCNRNNL 603
           N+TS+F+       ++ +   CN  +L
Sbjct: 21  NMTSVFHQLLQTEAFVDVTLACNEASL 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,002
Number of Sequences: 438
Number of extensions: 4190
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)