Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c04
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372...    33   0.20 
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961...    33   0.27 
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259...    31   0.61 

>05_01_0469 -
           3725117-3725170,3725282-3725356,3726938-3727015,
           3727091-3727183,3727582-3727696,3728028-3728158,
           3728243-3728512,3728983-3729120
          Length = 317

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 208 NGIYVTEVHEGSPAAKSGLRMHDKILQC 291
           +G+ V +V  GSPA ++G+RM D I  C
Sbjct: 212 SGLIVAKVSNGSPAERNGIRMGDVIFHC 239


>09_04_0245 +
           15995689-15995742,15995979-15996075,15996165-15996185,
           15996442-15996573,15996707-15996834,15996919-15997203,
           15997391-15997521,15999700-15999817,16000609-16000703,
           16001437-16001511,16001860-16001911,16002767-16002859,
           16003625-16003690,16003785-16003867,16003942-16004054,
           16005271-16005410,16005569-16005643,16006084-16006160,
           16006426-16006514,16008039-16008085,16009004-16009138,
           16009298-16009345,16009605-16009667,16009709-16009730,
           16010284-16010458,16014250-16014321,16014887-16014958,
           16015904-16016005,16016197-16016225,16016333-16016403,
           16016549-16016597,16016684-16016784,16017495-16017623,
           16017683-16017752,16017975-16018194,16019368-16019389,
           16019457-16019604,16021569-16021693,16022344-16022774,
           16022984-16023110,16023241-16023292,16023351-16023502
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 211 GIYVTEVHEGSPAAKSGLRMHDKILQCXGYD 303
           G+Y   V +GSPAA SG+ + D I +  G D
Sbjct: 391 GVYAETVFDGSPAADSGINVGDVITKLDGVD 421


>03_05_0582 +
           25823862-25824459,25824915-25825063,25825691-25825960,
           25826031-25826161,25826545-25826662,25826737-25826829,
           25826987-25827064,25827158-25827224,25828780-25829111
          Length = 611

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 208 NGIYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVT 318
           +G+ V EV     A K G+R+ D IL C G + + VT
Sbjct: 416 SGLIVREVFSQCAAEKHGIRVGDVILSCQGENISNVT 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,756
Number of Sequences: 37544
Number of extensions: 178737
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)