Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c02
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   0.85 
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   2.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   3.4  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   4.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   6.0  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    25   6.0  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    24   7.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    24   7.9  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 123  QFLGTSQAGPIQRDTFHEACEE 188
            Q +  SQAGP  RDT H   +E
Sbjct: 1338 QLISGSQAGPFARDTIHALMDE 1359


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 114 ADKKMIGLNTDAQGQTEEHERFHCDR 37
           A+KK   LN +    TE+ E F C+R
Sbjct: 328 AEKKKALLNCECGDSTEDSEMFQCER 353


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 278  AVMFTVALLLSESNAWIPVIILLSAL 201
            AV+ +V  +LS +N W PVI  L  +
Sbjct: 2193 AVLLSVIKILSLNNVWFPVIFGLGLI 2218


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 178 RVKNYFYSSADNKIITGIQALDSLNSKATVN 270
           R  +Y  S++ NK++ G    D+L   AT+N
Sbjct: 119 RHHDYTNSNSSNKLVFGTPLEDALRRDATIN 149


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 199 SSADNKIITGIQALDSLNSKATVNITAGGVGYPY 300
           S A +K+ +        NS ATV++ A G  +PY
Sbjct: 309 SFAHSKLPSSANPNTPFNSTATVDVGAAGSHFPY 342


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 135 YQGTGYIADKKMIGLNTDAQGQTEEHERFHCDRRRALSEEI 13
           Y+G GY   +++IG  ++  G+ E+      D R+ LS ++
Sbjct: 123 YKGLGYSVYRRVIGYYSNPHGKDED----SFDMRKPLSRDV 159


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 181 VKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGYP 297
           + N   +SA N +     ALD+   +    +T GG  YP
Sbjct: 71  IDNARKASATNPLFPLAIALDTKGPEIRTGLTVGGTDYP 109


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 130 LVHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAG 282
           L H    + NAI  +       Y  +D  +IT +   + LN  + VN + G
Sbjct: 621 LKHFDSKEKNAIFALGEKPQLMYYESDKLVITPLSCTEMLNISSYVNPSLG 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,296
Number of Sequences: 5004
Number of extensions: 31198
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)