Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c02
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   29   1.1  
SB_54120| Best HMM Match : Chlam_PMP (HMM E-Value=1.7e-06)             28   2.6  
SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)             28   2.6  
SB_39470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)          28   3.4  
SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.5  
SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32)                   27   5.9  
SB_11062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -1

Query: 405 FFCFKSIYS*IVLVDVYSDVVTQAGSTFTLHAHIHVRIADTARSNVHGRLTVERVQRLDT 226
           +FC  S+Y   V V V SD V   GS F+    ++  +    R ++  R+T ++V    +
Sbjct: 686 YFCSGSLYRFFVQVRVTSDQVLCTGSCFSCSGSLYSFVLLLFRFSLQLRVTSDQVLCTGS 745

Query: 225 CNNFII 208
             +F++
Sbjct: 746 LYSFVL 751


>SB_54120| Best HMM Match : Chlam_PMP (HMM E-Value=1.7e-06)
          Length = 935

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 375 IVLVDVYSDVVTQAGSTFTLHAHIHVRIADTARSNVH-GRLTVERVQRLDTCNNFII 208
           ++ +D++   V+  G+  + +  IHV ++     NV    +TV R   L T N  ++
Sbjct: 144 VITIDIHLRNVSVVGNQLSNNGLIHVEVSSGISCNVDLNNVTVTRTNNLGTRNGVVV 200


>SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)
          Length = 1211

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 375 IVLVDVYSDVVTQAGSTFTLHAHIHVRIADTARSNVH-GRLTVERVQRLDTCNNFII 208
           ++ +D++   V+  G+  + +  IHV ++     NV    +TV R   L T N  ++
Sbjct: 136 VITIDIHLRNVSVVGNQLSNNGLIHVEVSSGISCNVDLNNVTVTRTNNLGTRNGVVV 192


>SB_39470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
 Frame = -1

Query: 312 AH-IHVRIADTARSNVHGRLTVERVQRLDTCNNFIIGTAVEVV-LHTLHERYRVVLDQLV 139
           AH + +R A      V   L +E       C+  ++     +  L+T  +   V  + L 
Sbjct: 42  AHQVELRAAFLLVMEVVRLLGLEECSMATECDKHLLRLLTPIAKLYTAKQAIYVASEGLE 101

Query: 138 MYQGTGYIADKKMIGLNTDAQGQTEEHERFHCDRRRA 28
            + G GYI D  + GL  DAQ      E  H   + A
Sbjct: 102 SFGGQGYIEDTGLPGLLRDAQVLHAFQESVHSKLKAA 138


>SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)
          Length = 788

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 200 AVPIIKLLQVSKRWTRSTVR 259
           A+PII L++V+ R  RSTVR
Sbjct: 219 AIPIISLIEVTVRLVRSTVR 238


>SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = -1

Query: 375 IVLVDVYSDVVTQAGSTFTLHAHIHVRIADTARSNVHGRLTVERVQR-LDTCNNFIIGTA 199
           + L+D+++ VVT   S  T    +H  + D      +G L  + +      C+++ +   
Sbjct: 61  LALIDIFNVVVTLPVSLLTSILTLHHVVKDKPGRRPYGHLPHDLLPHGRGVCDHYSVSVR 120

Query: 198 VEVVLHTLHERYRVVLDQLVMYQGTGYIADKKMIGLNTDAQGQTEEH 58
             V   ++ +  + + DQ   Y G   + D++ + L   ++ +TE H
Sbjct: 121 RRVPAVSVDDLEK-LRDQTKKYDGDLSLPDRQRVKLQA-SRRRTESH 165


>SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32)
          Length = 639

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +3

Query: 27  AHVFYRNEISRAPLSVLVR------LCSILSFSCRRYIQFLGTSQAGPIQRDTFHEACEE 188
           A V  RN++ R  L +  R      L  +L   C R +Q    ++A  + R+  H AC E
Sbjct: 124 ACVNIRNKVGRTALHLAARRGYLEYLRVLLDAGCERDVQDKFRAKAVDLARNFEHHACVE 183

Query: 189 LLLQ 200
            LL+
Sbjct: 184 FLLR 187


>SB_11062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 136 VPRNWIYRRQENDRIEHRRTRTDRGAREISLR 41
           VPR+ I R   ND++   R R D   R++S R
Sbjct: 60  VPRSPIARVANNDQVSDERPRDDSVQRQVSER 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,984
Number of Sequences: 59808
Number of extensions: 231092
Number of successful extensions: 593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)