Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c02
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.76 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   9.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 282 ARSNVHG-RLTVERVQRLDTCNNFII 208
           ARS + G R+T E+++R D  +N+I+
Sbjct: 707 ARSLMEGPRMTAEQLKRTDIIHNYIM 732


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = +1

Query: 124 SSLVHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGYPYV 303
           S L  H L   N  PFMK    Y     +N    GIQ + +  S A V    G + +  V
Sbjct: 269 SPLTSHSLYYVNMEPFMK--SQY---EENNIEYEGIQDIFNTQSSAKVMSKNGVLFFGLV 323

Query: 304 N 306
           N
Sbjct: 324 N 324


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 171 ERYRVVLDQLVMYQGTGYIADKKMIGL 91
           ER + V  QL  Y+G G     + +GL
Sbjct: 499 ERMKQVYQQLNKYRGNGVSLKGETVGL 525


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 270 HYCGRCRLSVREYAHEE*TWIRPELRHRNIRQ 365
           H C    L    Y  +  TW+  EL+ +++ Q
Sbjct: 97  HTCIENHLKQLGYVQKLDTWVPHELKEKHLTQ 128


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 273 YCGRCRLSVREYAH 314
           YC   +L +R+Y+H
Sbjct: 56  YCHSLKLHLRKYSH 69


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 45  NEISRAPLSVLVRLCSILSFSCRRYI 122
           +EIS +  S    LC   + +CRRY+
Sbjct: 657 SEISESYSSNNKTLCKCDAQNCRRYL 682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,522
Number of Sequences: 438
Number of extensions: 2576
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)