Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b24
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica...    35   0.030
At4g13370.1 68417.m02090 expressed protein                             28   3.5  
At2g37420.1 68415.m04589 kinesin motor protein-related                 27   8.0  

>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to ATPase [Homo sapiens] GI:531196; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain, PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 1287

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 175 ENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQKNGAGLHTSSSCYW 354
           E S+   AY     N+W S    S +   T ++K Y Y+   T L    +G   SS+ ++
Sbjct: 360 EFSVRDDAYLSGETNRWWSGASSSAVSYQTDIEKGYSYMAPQTALPSQDSG-KISSNHFY 418

Query: 355 DNTT 366
           D+ T
Sbjct: 419 DSDT 422


>At4g13370.1 68417.m02090 expressed protein
          Length = 673

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 127 NQF--IVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYK 285
           N+F  I +DV K  K A ENS   ++ Q N ++ W  A + + L ++  L K ++
Sbjct: 489 NEFLKIYEDVMKYSKIASENSFSLSSDQQNPISLWVEAALATNL-EVVSLVKSHE 542


>At2g37420.1 68415.m04589 kinesin motor protein-related 
          Length = 1039

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 181  SIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVT 297
            ++  +  Q     + T A+VE+C+ Q+T LQ+ +   V+
Sbjct: 922  AVNDSLMQDRENKETTEAIVETCMNQVTLLQENHGQAVS 960


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,683,631
Number of Sequences: 28952
Number of extensions: 212952
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)