Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b22
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    32   0.098
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.8  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   4.9  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   8.5  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   8.5  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 31.9 bits (69), Expect = 0.098
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 1   KKIVSSFSVKC*IIILKSMMKCVSENQKCYDKKKQNQ 111
           KK++ +F   C  +++    K  SE++K YD KKQ+Q
Sbjct: 31  KKLLGNFKENCTSVVVDGHKKPRSESRKKYDAKKQHQ 67


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 370 GDSAGHFGRVRRALLVQPEPFEEAIR 293
           G   GH G VRRA + + +P E A+R
Sbjct: 461 GGYGGHGGYVRRARVFELDPVERAVR 486


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 374  RINARLTSHDKQIRQSTLDKLWNKQSGGIQMLLSILESSRDTPTS 508
            R + R T  + Q ++    K W ++S  +Q  L IL++ RDT T+
Sbjct: 1254 RSSFRKTIEEIQ-QEEEFQKWWEEESLRVQKELGILKTERDTSTN 1297


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 300 ASSNGSGCTSSALRTRPKWPALSPHASMRVSLHMTNR 410
           ++ N S  +SSA+   P  PA++P AS + S   T +
Sbjct: 343 STKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTTK 379


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 338 ESAAGAT*AVRRGNPSLHRPP 276
           E + G+T +V +GNPSL+R P
Sbjct: 94  EHSFGSTASVGQGNPSLNRNP 114


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 478 FGIFKR-HANFDLRNGYFEGDAMLE 549
           FG  K  H N D R GY +G A++E
Sbjct: 33  FGPVKNLHLNLDRRTGYVKGYALIE 57


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 240 FVWADESAAAYE*KKLKTNNYVSMYLE 160
           ++ ADES   Y+ K L T+  VSM LE
Sbjct: 279 YIVADESGMLYKFKALFTDETVSMELE 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,052
Number of Sequences: 5004
Number of extensions: 62762
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)