Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b22
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1066 - 8656108-8657622 30 1.7
04_04_0500 - 25677767-25680850 29 2.9
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 29 2.9
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 3.9
02_01_0544 - 3992381-3992500,3992718-3992757,3993121-3993203,399... 29 5.1
11_01_0776 + 6476743-6477539,6478658-6479481,6479803-6480790,648... 28 6.7
07_03_0690 - 20714691-20714922,20715498-20715572,20715914-207160... 28 6.7
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 28 8.9
>06_01_1066 - 8656108-8657622
Length = 504
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 452 GGIQMLLSILESSRDTPTSTYVTAILRETLCLKQGKGKKCA 574
GG+ MLLS SS T TS + A + TL + + +CA
Sbjct: 277 GGVAMLLSTSRSSATTTTSRFRLAHIVRTLNAAEDRAYRCA 317
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 299 CLFERLRLHQQRSPDATEVARAITARINARLTSHDKQI 412
C+ +R+RLH +PD + AI A N R T KQI
Sbjct: 513 CMLKRMRLHGI-TPDDVSFSTAINACSNIRATETGKQI 549
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 523 YFEGDAMLETRERKEVCSK*PRPAAVCSAVHIRERYSSYHSYIISD 660
Y E DA LE R ++ C + + +RERY +H ISD
Sbjct: 476 YIEKDAALERRFQQVYCGEPAVEDTISILRGLRERYELHHGVKISD 521
>06_03_0092 +
16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/25 (44%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Frame = +2
Query: 437 WNKQSGGIQMLLSILESSR-DTPTS 508
W+K++GG+ LL+++++SR + PTS
Sbjct: 262 WDKETGGLDPLLTLIDTSRQNQPTS 286
>02_01_0544 -
3992381-3992500,3992718-3992757,3993121-3993203,
3993322-3993552,3993661-3993705,3993958-3994079,
3994408-3994564,3994713-3994778,3994872-3994994
Length = 328
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 649 CTNDNLSTVRGYELLSTLLPGEVICCTLLSFPLFQA*RLPQNSRYVGRSWRVS*RFQNRE 470
C+ L G + L L+P V C ++ + Q + NS V W S R+++ E
Sbjct: 165 CSEQVLEARVGEDALFALIPDPVTCFSMARYHQKQVFHVFPNSNLVVVDWFTSGRYESGE 224
Query: 469 K 467
K
Sbjct: 225 K 225
>11_01_0776 +
6476743-6477539,6478658-6479481,6479803-6480790,
6482633-6483545
Length = 1173
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 332 RSPDATEVARAITARINARLTSHDKQIRQSTLDKLW 439
R PD + AI +++ R+ D QS +D LW
Sbjct: 224 RKPDMRRLLGAILSQVQLRIRISDTSTVQSLIDNLW 259
>07_03_0690 -
20714691-20714922,20715498-20715572,20715914-20716006,
20716177-20716209,20717521-20717710,20717992-20718061,
20718215-20718370,20718529-20718555
Length = 291
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 233 GPMNQLRHTNKKN*KQITMYLCIWNMTEVRFPT*HNI 123
G + RHTN + K MYL + T + FP H+I
Sbjct: 184 GGSSDARHTNNQKYKWTQMYLKELSFTHMSFPRKHSI 220
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 454 WDSDASLYFGIFKRHANFDLRNGY-FEG 534
WD + G+FK ANF+++NG F+G
Sbjct: 667 WDDAMNKSPGVFKGFANFEVKNGLDFDG 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,741,982
Number of Sequences: 37544
Number of extensions: 414226
Number of successful extensions: 1026
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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