Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b22
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    29   3.4  

>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 5
           protein.
          Length = 1434

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 570 HFFPFPCFKHSVSLKIAVT 514
           HFFPF C  H V L+ +VT
Sbjct: 459 HFFPFSCPNHGVFLQFSVT 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,995,003
Number of Sequences: 27780
Number of extensions: 362711
Number of successful extensions: 853
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)