Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b22
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38380.2 68418.m04636 expressed protein                             31   0.80 
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    30   1.4  
At2g38600.1 68415.m04741 acid phosphatase class B family protein...    29   4.3  
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    29   4.3  
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    28   7.4  
At1g32860.1 68414.m04049 glycosyl hydrolase family 17 protein si...    28   7.4  
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    27   9.8  
At1g03440.1 68414.m00324 leucine-rich repeat family protein cont...    27   9.8  

>At5g38380.2 68418.m04636 expressed protein
          Length = 336

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 595 LPGEVICCTLLSFPLFQA*RLPQNSR 518
           LPG ++CC +L F +F+A  L +N +
Sbjct: 284 LPGFIVCCLVLGFGIFEATSLERNKK 309


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 533 ETLCLKQGKGKKCAANNLARQQCAQQFISA-NGTQVIIRTLLATHGKRDGNVGTE 694
           E + +K   GK+C     A + CA+Q +S  NGTQ+  +++  + G+   N  T+
Sbjct: 303 ELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQ 357


>At2g38600.1 68415.m04741 acid phosphatase class B family protein
           similar to acid phosphatase [Glycine max] GI:3341443;
           contains Pfam profile PF03767: HAD superfamily
           (subfamily IIIB) phosphatase
          Length = 251

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 389 LTSHDKQ-IRQSTLDKLWNKQSGGIQMLLSILESSRDTPTSTYVTAILRETL 541
           +T  D++ +RQ+TL+ L N+   G + L+     ++    +TY T I +E +
Sbjct: 163 VTGRDEETLRQATLENLHNQGFTGYERLIMRTADNKRQSATTYKTRIRKEMM 214


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 523 YFEGDAMLETRERKEVCSK*PRPAAVCSAVHIRERYSSYHSYIISDA 663
           Y E D  LE R ++ +C +      +     +RERY  +H   ISD+
Sbjct: 403 YIEKDPALERRFQQVLCVQPSVEDTISILRGLRERYELHHGVTISDS 449


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
           RNA helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 458 IQMLLSILESSRDTPTSTYVTAILRETLCLKQGKGKKCAANNLARQQCAQQFISANGTQV 637
           +Q  +S+++    T  +    AI+       QG+   CA +N+A  Q A++ ISA G +V
Sbjct: 501 LQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEK-ISATGLKV 559

Query: 638 I 640
           +
Sbjct: 560 V 560


>At1g32860.1 68414.m04049 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 426

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 96  KKAESNLIYNIMSGGKTNFSHIPNT*IHSYLFLIF 200
           K+   NLI  +MSG KT     PN  +  Y+F +F
Sbjct: 286 KRYNGNLIKMMMSGKKTKTPLKPNNDLSIYVFALF 320


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 291 RRIAS--SNGSGCTSSALRTRPKWPALSPHASMRVSLHM 401
           R +AS  SN S CT  +       P ++P AS RVS +M
Sbjct: 126 RSVASTTSNSSNCTIDSTAGPSPRPKMNPRASRRVSSNM 164


>At1g03440.1 68414.m00324 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 397

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 407 QIRQSTLDKLWNKQSGGIQMLLSILES 487
           Q+  ST+D  +N+ SGGI  LLS +E+
Sbjct: 284 QVTISTVDLSYNRFSGGISPLLSSVEN 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,442
Number of Sequences: 28952
Number of extensions: 328929
Number of successful extensions: 833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)