Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b21
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   5.1  
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105...    28   6.8  
02_05_0534 + 29819323-29819900,29820122-29820202,29821007-298210...    28   6.8  

>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 458 FPFPIIVLKGLKAIVCRLCHFWCNPYQWVFLI 363
           +P P ++L GL  +V    HFW +P +W  L+
Sbjct: 90  WPSPYVLLCGLLLVVSLFEHFW-HPLKWFALV 120


>07_03_1652 - 28409097-28409165,28409788-28409911,28410317-28410557,
            28410641-28411375,28411464-28411667,28411741-28412422,
            28412517-28412773,28412849-28413543,28414003-28414250
          Length = 1084

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 307  KFKSFQLKTIRILGEDLSNIKNTH*YGLHQK*QRR 411
            +FK+ + K +R   E +SN++ +  + ++QK + R
Sbjct: 1049 EFKNLETKFVRFFAETISNVQKSKPFSINQKLENR 1083


>02_05_0534 +
           29819323-29819900,29820122-29820202,29821007-29821027,
           29821310-29821366,29822028-29822147,29822278-29822494
          Length = 357

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -1

Query: 440 VLKGLKAIVCRLCHF-----WCNPYQWVFLILDKSSPKIRIVFN*NDLNFC 303
           +L GL++ +C   HF     W NPY   + +LD + P++   F  ++L  C
Sbjct: 249 ILLGLRSSLCHHYHFPLAQGWENPYVIGYNVLDLARPRLIFCFL-DELRVC 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,814,612
Number of Sequences: 37544
Number of extensions: 342330
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)