Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b21
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27730| Best HMM Match : DUF755 (HMM E-Value=3.9)                    33   0.18 
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)              29   5.2  

>SB_27730| Best HMM Match : DUF755 (HMM E-Value=3.9)
          Length = 262

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +1

Query: 601 WTSSCIFISRNSFQEDFCGSCLVLDTTWYDVYYTLLFIE 717
           W+ +C F S  SF  DF  SC VL TT+Y  +  L+F++
Sbjct: 42  WSQTCAFSSHFSF--DFTSSCEVLGTTFY-AFVMLVFLK 77


>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 485 VIYLLNPCHVTTLIQIYLLAAPP 553
           ++YLL PC +T+L+ I L   PP
Sbjct: 201 IVYLLAPCLLTSLLAILLFTLPP 223


>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
          Length = 1097

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/80 (23%), Positives = 40/80 (50%)
 Frame = +1

Query: 481 HCDIFVESMSCNNINTNLFTSCSTK*NCYSIV*NSFIFVKWTSSCIFISRNSFQEDFCGS 660
           H D  ++++SC   +T+L    S+   CY+ +    +  +   + + I   S++   C +
Sbjct: 47  HTDFVMQTLSCRPRHTDLVIQTSSYRPCYTDLVIQTLLYRPCHTDLVIQTLSYRP--CYT 104

Query: 661 CLVLDTTWYDVYYTLLFIET 720
            LV+ T+ Y   +T L ++T
Sbjct: 105 DLVIQTSSYRPCHTDLVVQT 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,321,277
Number of Sequences: 59808
Number of extensions: 431258
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)