Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b21
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical p...    82   5e-16
Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical p...    82   5e-16
AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical ...    31   1.1  

>Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical
           protein C35C5.10b protein.
          Length = 318

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
 Frame = +2

Query: 365 LKIPIDTDYTKSDRGGKRXXXXXXXXX-WGMEIGFKFASHTVIYLLNPCHVTTLIQIYLL 541
           + IP+D  +T   R   R          +G E+ +K  S T I+LLNPCHVTT +Q+ LL
Sbjct: 75  MSIPLDCSFTLPTRNVSRYVILTVYSLIFGAELAYKMISRTGIFLLNPCHVTTTMQLMLL 134

Query: 542 AAP-PSKIVTALFRIHLYLLNGPLLAFLFPETASRKIFVEAALYWIQHGMMCIIPYYLLR 718
                SK    LFR+ LY + G   A  FP   +R +  E  +Y+ QH  + ++P YL+ 
Sbjct: 135 TMEGTSKKACFLFRLMLYFMPGAWFALAFPILNTRNLPGEVFIYYAQHVAILVVPVYLMY 194

Query: 719 LGGVY 733
           + G +
Sbjct: 195 IQGAF 199


>Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical
           protein C35C5.10a protein.
          Length = 294

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
 Frame = +2

Query: 365 LKIPIDTDYTKSDRGGKRXXXXXXXXX-WGMEIGFKFASHTVIYLLNPCHVTTLIQIYLL 541
           + IP+D  +T   R   R          +G E+ +K  S T I+LLNPCHVTT +Q+ LL
Sbjct: 51  MSIPLDCSFTLPTRNVSRYVILTVYSLIFGAELAYKMISRTGIFLLNPCHVTTTMQLMLL 110

Query: 542 AAP-PSKIVTALFRIHLYLLNGPLLAFLFPETASRKIFVEAALYWIQHGMMCIIPYYLLR 718
                SK    LFR+ LY + G   A  FP   +R +  E  +Y+ QH  + ++P YL+ 
Sbjct: 111 TMEGTSKKACFLFRLMLYFMPGAWFALAFPILNTRNLPGEVFIYYAQHVAILVVPVYLMY 170

Query: 719 LGGVY 733
           + G +
Sbjct: 171 IQGAF 175


>AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical
           protein K03H6.6 protein.
          Length = 295

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 143 FFLTPQRKIIETIIVFLICVYLLVCIYFSLINTKF 247
           FFL  +RKI++TI +F  C +L+    F L    F
Sbjct: 243 FFLAFRRKILQTICIFCACYFLIPFTLFFLAGCFF 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,167
Number of Sequences: 27780
Number of extensions: 353265
Number of successful extensions: 915
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)