Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b18
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600... 35 0.080
11_03_0068 + 9564354-9565180,9566658-9568704 32 0.43
11_01_0784 - 6557776-6557802,6557909-6557969,6558270-6558336,656... 30 1.7
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 1.7
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 29 4.0
11_03_0060 - 9406273-9407142 29 5.2
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465 29 5.2
01_02_0006 + 10118766-10118775,10119383-10119526,10120534-101206... 29 5.2
06_03_0602 - 22666227-22668740 28 9.2
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 28 9.2
>01_06_1642 +
38857326-38857581,38858577-38858818,38859001-38860004,
38860170-38860587,38860673-38860789
Length = 678
Score = 34.7 bits (76), Expect = 0.080
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 152 HPSYWLFHVWSLILLYYCIPVVASWLF 72
HP+ W+ VWSL+L+Y +V WLF
Sbjct: 497 HPALWVTIVWSLLLVYMIYLLVFPWLF 523
>11_03_0068 + 9564354-9565180,9566658-9568704
Length = 957
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 173 FSSDHMSHPSYWLFHVWSLILLYYCIPVVASWL 75
F D SHP Y L++ ++ YYC P++ W+
Sbjct: 745 FMLDSWSHPPYPLYNFQ--MITYYCFPIIPEWM 775
>11_01_0784 -
6557776-6557802,6557909-6557969,6558270-6558336,
6560630-6563309
Length = 944
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Frame = +2
Query: 80 MKLLQEYNNI--IISATKHEIANMKDGSCDLKKKSNNSLQMNPVASGDNVTTGLSAHRLK 253
M + EY+++ + + H+I S ++K ++ + D LS +R K
Sbjct: 479 MLQVTEYDDLGRVNTCGMHDIMRDLALSAAKEEKFGSANDFGTMVEIDKDVRRLSTYRWK 538
Query: 254 EELPLLVPCCEGRELQISEDLVRSGLSAIS--VKHDSALQCLSMSNCETLQVPPGIVKHR 427
+ ++ R + +S + S + +S + H S L L + + E QVPP I
Sbjct: 539 DSTAPILKLLRLRTI-VSLEAFSSSIDMLSSVLSHSSYLTVLELQDSEITQVPPSIGNLF 597
Query: 428 N-SFRSLHRPDLKRVP 472
N + L R +K +P
Sbjct: 598 NLRYIGLRRTKVKSLP 613
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +2
Query: 122 TKHEIANMKDGSCDLKKKSNNSLQMNPVASGDNVTTGLSAHRLKEELPLLVPCCEGRELQ 301
T E N KDG L +++N LQ+ D + S+H L L V EG +
Sbjct: 1533 TLTEEGNTKDGEISLLRQANERLQVEADILKDKEDSLTSSHEL---LSKEVEQHEGEFVV 1589
Query: 302 ISEDLVRSGLSAISVKHDSALQCLS 376
+ +D + S ++A +V + AL+ ++
Sbjct: 1590 LMDDAISSSVNA-AVYEEKALELMT 1613
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 314 NLHLSVIPVPHNKEQGGVVLP*AYEQIVLWL 222
N++LS + V HN G ++LP Q + WL
Sbjct: 343 NIYLSYLSVKHNSFVGSLILPSTVNQNLSWL 373
>11_03_0060 - 9406273-9407142
Length = 289
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 173 FSSDHMSHPSYWLFHVWSLILLYYCIPVVASWL 75
F D HP Y L++ + YYC P++ W+
Sbjct: 196 FMLDSWYHPPYPLYNFQ--MTTYYCFPIIPEWM 226
>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
Length = 1058
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 362 LQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKPDELEL----LFRGYAD 529
LQ L + NC L+ P V H RSL D+ P L ++ + LEL +G+
Sbjct: 587 LQFLILKNCPLLESLPRCVGHLKKLRSL---DISGTPMLNVIQFNLLELTELNCLQGF-- 641
Query: 530 LPARSLQEN 556
+P S+Q+N
Sbjct: 642 VPTTSVQQN 650
>01_02_0006 +
10118766-10118775,10119383-10119526,10120534-10120659,
10120885-10121003,10121355-10121609
Length = 217
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 140 NMKDGSCDLKKKSNNSLQMNPVASGDNVTTGLSA 241
N++D S KSN S ++ P GDNVT G SA
Sbjct: 64 NIQDNSLVHVAKSNLSGKVFPTIIGDNVTVGHSA 97
>06_03_0602 - 22666227-22668740
Length = 837
Score = 27.9 bits (59), Expect = 9.2
Identities = 25/95 (26%), Positives = 38/95 (40%)
Frame = -2
Query: 575 LFVTILCSLGDFALANLHSL*TAVPIHRASCDVDKVLVLDQVGEENETSSDA*QYRVVLV 396
+ VTIL + F L SL P+H AS D +L N+ + +R
Sbjct: 11 VLVTILLACFSFFLITAFSLVPTAPLHDASDTTDFQALLCLKLHLNDNAGVMASWRNDSS 70
Query: 395 AFRSWTCSGTGGRCRVSRRSQTNRYAPNLHLSVIP 291
+ W T + SR ++ N + NLH + P
Sbjct: 71 QYCQWP-GVTCSKSHTSRVTELNLESSNLHGQIPP 104
>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 356 SALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRM-KPDELELLFRGYADL 532
++L+ L S C L+ P + +S +SLH + + L + P LE LF DL
Sbjct: 1377 TSLKTLVFSECSYLRSLPATLHQISSLKSLHLSSCESIDSLPHLGLPGSLERLFIAGCDL 1436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,941,463
Number of Sequences: 37544
Number of extensions: 436097
Number of successful extensions: 1153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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