Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b18
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35754| Best HMM Match : DUF755 (HMM E-Value=2.4)                    34   0.11 
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)                      32   0.57 
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)                   30   2.3  
SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)               28   7.1  
SB_59271| Best HMM Match : LRR_1 (HMM E-Value=0.014)                   28   9.4  
SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)                 28   9.4  

>SB_35754| Best HMM Match : DUF755 (HMM E-Value=2.4)
          Length = 604

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 29/117 (24%), Positives = 51/117 (43%)
 Frame = +2

Query: 164 LKKKSNNSLQMNPVASGDNVTTGLSAHRLKEELPLLVPCCEGRELQISEDLVRSGLSAIS 343
           LK    N L ++   + ++     S   + ++L +++ C  G+   IS  +V   L   S
Sbjct: 180 LKDSRINGLSVDSDLASNDGEVWFSELDISKDLSMVLSCY-GKSTGISNSVVNDSLDGSS 238

Query: 344 VKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKPDELELLF 514
               S+     +SNC  +   PGIVK   S     R + K + +++  K  E  L+F
Sbjct: 239 QLKTSS----RLSNCYVIPESPGIVKGTASSAGNTRREDKSLSFIKDRKSLESPLIF 291


>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
          Length = 1338

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
 Frame = +2

Query: 302 ISEDLVRSGLSAISVKH--DSALQCLSMSNCETLQVPPGIVKHRNSFRSL--HRPDL--- 460
           +S DL+ S LS ++  H  D A  C     CET +  PG+    ++F  L  H P +   
Sbjct: 601 VSHDLIHS-LSEVAFSHTEDLARNCADYDLCETCEAIPGVHNELHAFLKLRFHAPGIGLK 659

Query: 461 --KRVPYLRR 484
             + VP LR+
Sbjct: 660 QGEMVPLLRQ 669


>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 293 ELQISEDLVRSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRN 430
           E+Q+ +DL       +SV  +  L  LS+ +  T ++ PG   H N
Sbjct: 87  EIQLGKDLFNGKWHTVSVNRNGRLTMLSVDDLSTTKITPGPYDHLN 132


>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
          Length = 998

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 539 RSLQENKESSQIIFPFAQSVTK-AIKQENVDHDKGMANFLHPIPETK 676
           RSL E ++ S    P  Q  ++ AIKQE+ D ++  ++   P P T+
Sbjct: 308 RSLYEKRQRSHSHIPSTQGRSRSAIKQESFDDERSSSDETKPSPATR 354


>SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)
          Length = 495

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 242 HRLKEELPLLVPCCEGRELQISEDLVR---SGLSAISVKHDSALQCLSMSNCETL 397
           H+  E+   ++   E REL++   L R   S  +AI  +HD+ ++C+ +    TL
Sbjct: 328 HKKTEQDIQMLKVLEDRELEVDNSLDRLEPSAKAAIQRQHDAEMRCMEVQRRLTL 382


>SB_59271| Best HMM Match : LRR_1 (HMM E-Value=0.014)
          Length = 897

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 287 GRELQISEDLVRSGLSAISVKHD-SALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLK 463
           GR+L+   DL        +      +L+ LS++NC    +P G+ +  N     H  D  
Sbjct: 382 GRDLKKERDLTMRDFDCTNNWAKLKSLKSLSLTNCNLTSIPEGVFRLWNPG---HPRDFH 438

Query: 464 RVPYLRRMK 490
           + PY R ++
Sbjct: 439 KSPYYRGVR 447


>SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)
          Length = 359

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
 Frame = +2

Query: 278 CCEGRELQISE---DLVRSG-----LSAISVKHDSALQCLSMSNCE 391
           C EGR ++ S     L + G     LS + VK  S+L+ LS+SNCE
Sbjct: 40  CWEGRSVRASSLLRQLAKGGCAARRLSWMLVKQCSSLKTLSLSNCE 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,318,931
Number of Sequences: 59808
Number of extensions: 511069
Number of successful extensions: 1479
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)