Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b18
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17890.1 68417.m02666 human Rev interacting-like family prote...    30   1.4  
At2g01650.1 68415.m00091 zinc finger (C2H2 type) family protein ...    30   1.4  
At1g19580.1 68414.m02439 bacterial transferase hexapeptide repea...    30   1.9  
At5g65610.1 68418.m08254 expressed protein  ; expression support...    29   2.5  
At3g04630.2 68416.m00496 expressed protein                             29   2.5  
At3g04630.1 68416.m00495 expressed protein                             29   2.5  
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR...    29   3.3  
At5g51370.1 68418.m06369 F-box family protein similar to unknown...    28   7.7  
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR...    28   7.7  
At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1, ...    28   7.7  

>At4g17890.1 68417.m02666 human Rev interacting-like family protein
           / hRIP family protein contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 413

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +2

Query: 164 LKKKSNNSLQMNPVASGD--NVTTGLSAHRLKEELPL 268
           + +++N+ L  +PVA+     V+ G+S++ +KEELPL
Sbjct: 128 IAEETNSGLLSSPVATSQLPEVSNGVSSYSVKEELPL 164


>At2g01650.1 68415.m00091 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 458

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 428 NSFRSLHRPDLKRVPYLRRMKPDELELLF-RGYADLPARSLQENKESSQIIFPFAQSV 598
           +SF SL   ++KR   LRR K  E +LL  R Y +  A++ ++  + S I   F   V
Sbjct: 307 DSFYSLSADEIKREADLRRKKIAESQLLIPRSYKEKQAKAARKRYKRSMIRVQFPDGV 364


>At1g19580.1 68414.m02439 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 275

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 140 NMKDGSCDLKKKSNNSLQMNPVASGDNVTTGLSA 241
           N++D S     KSN S +++P   GDNVT G SA
Sbjct: 99  NIQDNSLVHVAKSNLSGKVHPTIIGDNVTIGHSA 132


>At5g65610.1 68418.m08254 expressed protein  ; expression supported
           by MPSS
          Length = 250

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 585 SHRV*LKRLNKKMWITIRAWRISCIQFPRRNPALKMYRPA*DFTGPEHDC 734
           +H + +KRL   +W+ IRA+ +S +   + N  LK +RP       E+DC
Sbjct: 185 AHSIVVKRLVLLLWLLIRAYSVSSVWMRQDNGELK-HRPV------EYDC 227


>At3g04630.2 68416.m00496 expressed protein
          Length = 286

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 449 RPDLKRVPYLRRMKPDELELLFRGYADLPARSLQENKESSQIIFPFAQSVTKAIKQENVD 628
           +P+LK++P  R   P  +    + ++D  + S +E  E  + +    +  T  ++ ++ D
Sbjct: 195 KPELKKLPLTRPKSPKLILSRRKSFSDAVSSSSRE--EILKTVSNRNRHSTGTVQNKDDD 252

Query: 629 HDKGMANFLHPIPETKSG 682
           H     N  H  P  +SG
Sbjct: 253 HRNKNTNAAHDSPRVRSG 270


>At3g04630.1 68416.m00495 expressed protein
          Length = 287

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 449 RPDLKRVPYLRRMKPDELELLFRGYADLPARSLQENKESSQIIFPFAQSVTKAIKQENVD 628
           +P+LK++P  R   P  +    + ++D  + S +E  E  + +    +  T  ++ ++ D
Sbjct: 196 KPELKKLPLTRPKSPKLILSRRKSFSDAVSSSSRE--EILKTVSNRNRHSTGTVQNKDDD 253

Query: 629 HDKGMANFLHPIPETKSG 682
           H     N  H  P  +SG
Sbjct: 254 HRNKNTNAAHDSPRVRSG 271


>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1215

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +2

Query: 131 EIANMKDGSCDLKKKSNNSLQMNPVASGDNVTTGLSAHRLKEELPLLVPCCEGRELQI 304
           E A ++  S D+  K NNS    P+   D +  G+ AH  K EL L +  CE R + I
Sbjct: 203 EAAMIEKISTDISNKLNNS---TPLRDFDGLV-GMGAHMEKLELLLCLDSCEVRMIGI 256


>At5g51370.1 68418.m06369 F-box family protein similar to unknown
           protein (emb|CAB82288.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 355

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 278 CCEG-RELQISEDLVRSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHRP 454
           CCE   EL I +  +  G  A ++ +  +L+ L +S+C  +   PG  K   S  ++   
Sbjct: 251 CCEVLEELSICDHRMDDGWIA-ALSYFESLKILRISSCRKIDASPGPEKLLRSCPAMESL 309

Query: 455 DLKR 466
            LKR
Sbjct: 310 QLKR 313


>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 341 SVKHDSALQCLSMSNCETLQVPPGIVK 421
           ++K  S L+CL M NCE L+  P + K
Sbjct: 900 NLKDFSNLKCLVMKNCENLRYLPSLPK 926


>At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 452 PDLKRVPYLRRMKPDELELLFRGYADLPAR-SLQENKESSQIIFPFAQSVTKAIKQENVD 628
           PDL  +   R   P+ +  L  GY D PA  S++E    +      A ++ K +  E V+
Sbjct: 177 PDLSLITKARHNGPNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEAVE 236

Query: 629 HDKGM 643
           ++ G+
Sbjct: 237 YEDGV 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,376
Number of Sequences: 28952
Number of extensions: 347041
Number of successful extensions: 950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)