Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b17
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 31 0.53
AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical ... 31 0.93
Z99102-2|CAB11775.1| 499|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z74043-12|CAA98548.1| 503|Caenorhabditis elegans Hypothetical p... 28 4.9
Z74040-7|CAA98515.1| 503|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL117203-2|CAB55104.1| 321|Caenorhabditis elegans Hypothetical ... 28 4.9
AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical... 28 6.5
AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical ... 28 6.5
Z82082-11|CAH10808.1| 721|Caenorhabditis elegans Hypothetical p... 27 8.6
Z82082-9|CAB04966.2| 586|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z50741-6|CAA90613.3| 331|Caenorhabditis elegans Hypothetical pr... 27 8.6
U53332-5|AAK31535.2| 821|Caenorhabditis elegans Related to yeas... 27 8.6
DQ178636-1|ABD75715.1| 826|Caenorhabditis elegans vacuolar prot... 27 8.6
AL132902-16|CAB82004.2| 721|Caenorhabditis elegans Hypothetical... 27 8.6
AL032630-15|CAA21571.3| 331|Caenorhabditis elegans Hypothetical... 27 8.6
AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical ... 27 8.6
AC006634-3|AAF39795.3| 535|Caenorhabditis elegans Hypothetical ... 27 8.6
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = -2
Query: 365 SSVFFLEISAFLFCITTN*IYFMN---SALRAIKAASLSWCRWNQFRWVSLRVYSFFCKR 195
SS+FF ++ FL+ + + F N ++L + + +L +C+ S+ + C +
Sbjct: 368 SSLFFWKLLTFLYLLLQTIVIFPNYSKTSLLSFRECNL-YCQTTSLTIFSIFFLVYSCIQ 426
Query: 194 IDLFVDSLMFHFHIDSCKPVSFLLFL 117
LFV +++ F ++ +S LFL
Sbjct: 427 SSLFVGIVLWSFKSEAMFQISLNLFL 452
>AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical
protein T11F8.2 protein.
Length = 424
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 636 WYNLYSLHTLNFLIFMMTIVQINPMLSNLTIYFGYIIAQI 517
W + HT++FL FM + N S +T YF + + +
Sbjct: 263 WSYMKGTHTISFLSFMALLCFYNFQRSPMTTYFAFFVCNV 302
>Z99102-2|CAB11775.1| 499|Caenorhabditis elegans Hypothetical
protein B0331.1 protein.
Length = 499
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 396 SW*CSWNVNKNINLPQDVYKSVLNLF 473
SW C WN+ N + ++VYK ++++F
Sbjct: 319 SWLC-WNIAHNPEVQENVYKEIISIF 343
>Z74043-12|CAA98548.1| 503|Caenorhabditis elegans Hypothetical
protein T19B10.1 protein.
Length = 503
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 396 SW*CSWNVNKNINLPQDVYKSVLNLF 473
SW C WN+ N N+ + VYK ++ +F
Sbjct: 320 SWAC-WNLAHNPNVQEKVYKEMIEVF 344
>Z74040-7|CAA98515.1| 503|Caenorhabditis elegans Hypothetical
protein T19B10.1 protein.
Length = 503
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 396 SW*CSWNVNKNINLPQDVYKSVLNLF 473
SW C WN+ N N+ + VYK ++ +F
Sbjct: 320 SWAC-WNLAHNPNVQEKVYKEMIEVF 344
>Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical
protein ZK632.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 101 LYTDQKGRGERRQVCKNQYGSETSSYRRTNQSVYKKNC 214
LY D+ G+ E+++ + Q+ E ++RT Y+ C
Sbjct: 380 LYLDRTGQLEKQREKRKQWAEEGFGHKRTETDTYESLC 417
>AL117203-2|CAB55104.1| 321|Caenorhabditis elegans Hypothetical
protein Y48C3A.3 protein.
Length = 321
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 580 RPNKPYAIQFNHLFRIYYCPNLNPKKDTVLNIC 482
+P K A F+HL +IYY P + +D + C
Sbjct: 244 KPTKVDACIFSHLCQIYYAPYTSEHRDLIDGEC 276
>AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical
protein Y116A8C.22 protein.
Length = 286
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -3
Query: 523 PNLNPKKDT----VLNICMIVNKLSTDL*TSCGKLIFL 422
P +N KKDT V IC + +K T L T C K + L
Sbjct: 228 PEINQKKDTKQVHVCPICTLASKNGTCLCTKCQKWVHL 265
>AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical
protein Y62H9A.1 protein.
Length = 366
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 548 PFISDILLPKFKSKERYCAKYLYDCKQIKYGFVDILWQVNILIDVPRALPRLFAQTMQS 372
PF +L P + C YL K ++YGF + V + VPR P+ QT S
Sbjct: 289 PFAMVVLAPTQLTCPVICILYLILIKPLRYGFFKL---VGLHKYVPRNQPKAVTQTQLS 344
>Z82082-11|CAH10808.1| 721|Caenorhabditis elegans Hypothetical
protein Y71A12B.12a protein.
Length = 721
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 331 RNADISKKKTLLHLLCIVWAKSLGNALGTSIRI-LTCHKM 447
R D+ + TL HL + + L NAL T+IR+ L+C+K+
Sbjct: 213 RAQDLEELFTLKHLNVLDMSIRLKNALQTNIRVFLSCNKV 252
>Z82082-9|CAB04966.2| 586|Caenorhabditis elegans Hypothetical
protein Y71A12B.12b protein.
Length = 586
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 331 RNADISKKKTLLHLLCIVWAKSLGNALGTSIRI-LTCHKM 447
R D+ + TL HL + + L NAL T+IR+ L+C+K+
Sbjct: 78 RAQDLEELFTLKHLNVLDMSIRLKNALQTNIRVFLSCNKV 117
>Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical
protein K03A11.4 protein.
Length = 664
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 136 TGLQESIWK*NIKLSTNKSIRLQKKLYTRRLTQRN 240
T LQ S WK ++TNK++ + + +TR+ +RN
Sbjct: 113 TALQNSSWK---IVNTNKNLECRARCHTRKSDRRN 144
>Z50741-6|CAA90613.3| 331|Caenorhabditis elegans Hypothetical
protein Y62H9A.14 protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 170 MFHFHIDSCKPVSFLLFLSDQYKVWTKVIRLHF**TFP 57
+F ID CKP SF+ S +W I ++ T P
Sbjct: 233 LFQRRIDGCKPRSFINNYSKMNNIWNSSIDINSTKTLP 270
>U53332-5|AAK31535.2| 821|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 35 protein.
Length = 821
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 417 VNKNINLPQDVYKSVLNLFTIIQIFSTVSFFGFK 518
+ K +N+P D YK+VL L + + +++F ++
Sbjct: 415 LTKLLNIPIDEYKNVLRLSQLPEYIKVMNYFDYR 448
>DQ178636-1|ABD75715.1| 826|Caenorhabditis elegans vacuolar protein
sorting factor protein.
Length = 826
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 417 VNKNINLPQDVYKSVLNLFTIIQIFSTVSFFGFK 518
+ K +N+P D YK+VL L + + +++F ++
Sbjct: 420 LTKLLNIPIDEYKNVLRLSQLPEYIKVMNYFDYR 453
>AL132902-16|CAB82004.2| 721|Caenorhabditis elegans Hypothetical
protein Y71A12B.12a protein.
Length = 721
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 331 RNADISKKKTLLHLLCIVWAKSLGNALGTSIRI-LTCHKM 447
R D+ + TL HL + + L NAL T+IR+ L+C+K+
Sbjct: 213 RAQDLEELFTLKHLNVLDMSIRLKNALQTNIRVFLSCNKV 252
>AL032630-15|CAA21571.3| 331|Caenorhabditis elegans Hypothetical
protein Y62H9A.14 protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 170 MFHFHIDSCKPVSFLLFLSDQYKVWTKVIRLHF**TFP 57
+F ID CKP SF+ S +W I ++ T P
Sbjct: 233 LFQRRIDGCKPRSFINNYSKMNNIWNSSIDINSTKTLP 270
>AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical
protein C23H5.11 protein.
Length = 394
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -2
Query: 362 SVFFLEISAFLFCITTN*IYFMNSALRAIKAASLSWCRWNQ 240
++F IS C T + +N R + +S+SW W +
Sbjct: 100 ALFHFVISTLCLCFTIRLLLLLNCIRRCRRWSSVSWVAWQK 140
>AC006634-3|AAF39795.3| 535|Caenorhabditis elegans Hypothetical
protein F35F11.1 protein.
Length = 535
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 191 DLFVDSLMFHFHIDSCKPVS 132
D+F FHFH+D KPV+
Sbjct: 468 DIFTHIPAFHFHVDQDKPVA 487
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,698,477
Number of Sequences: 27780
Number of extensions: 307623
Number of successful extensions: 832
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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