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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b17
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28980.1 68418.m03585 hypothetical protein contains Pfam prof...    30   1.1  
At4g28530.1 68417.m04082 no apical meristem (NAM) family protein...    29   3.5  
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains...    28   4.6  
At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase fam...    28   4.6  
At5g36070.1 68418.m04345 hypothetical protein                          28   6.1  
At4g19280.1 68417.m02842 hypothetical protein                          28   6.1  
At1g35080.1 68414.m04347 hypothetical protein                          28   6.1  
At1g03106.1 68414.m00287 expressed protein                             28   6.1  
At5g13940.1 68418.m01630 hypothetical protein                          27   8.0  

>At5g28980.1 68418.m03585 hypothetical protein contains Pfam profile
           PF02721: Domain of unknown function DUF223
          Length = 354

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 248 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFH 156
           W  +R    R Y F    +DLF D LMFH +
Sbjct: 313 WEFYRMYKRRYYKF--SEVDLFADKLMFHIN 341


>At4g28530.1 68417.m04082 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           No apical meristem gene (NAM), required for pattern
           formation in embryos and flowers-Petunia hybrida,
           PATCHX:E205713
          Length = 352

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 577 PNKPYAIQFNHLFRIYYCPNLNPKKDTVLNICMIVNK 467
           PN        H FR+  CPN+ PK+D VL  C + NK
Sbjct: 139 PNGIKTTWIMHEFRLE-CPNIPPKEDWVL--CRVFNK 172


>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
           Pfam profile: PF02362 B3 DNA binding domain; identical
           to cDNA auxin response factor 4 (ARF4) GI:4102597
          Length = 788

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 155 YGSETSSYRRTNQSVYKKNCIHADLPNEIDSSGTKKG 265
           +G ET  +   N+     N + ADLP +ID  G +KG
Sbjct: 597 FGEETRKFDAQNEGGLPNN-VTADLPFKIDMMGKQKG 632


>At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase family
           protein similar to SP|Q92535 Phosphatidylinositol-glycan
           biosynthesis, class C protein (PIG-C) {Homo sapiens}
          Length = 303

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 633 YNLYSLHTLNFLIFMMTIVQIN 568
           Y++Y+LH L FL+F+  ++ +N
Sbjct: 250 YSIYALHRLFFLVFLSLVLLVN 271


>At5g36070.1 68418.m04345 hypothetical protein
          Length = 224

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 248 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFH 156
           W  +     R Y F    +DLF D LMFH +
Sbjct: 143 WEFYSMYKRRYYKF--SEVDLFADKLMFHIN 171


>At4g19280.1 68417.m02842 hypothetical protein 
          Length = 254

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 248 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFH 156
           W  +     R Y F    +DLF D LMFH +
Sbjct: 204 WEFYSMYKRRYYKF--SEVDLFADKLMFHIN 232


>At1g35080.1 68414.m04347 hypothetical protein
          Length = 386

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 248 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFH 156
           W  +     R Y F    +DLF D LMFH +
Sbjct: 305 WEFYSMYKRRYYKF--SEVDLFADKLMFHIN 333


>At1g03106.1 68414.m00287 expressed protein
          Length = 65

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 167 FHFHIDSCKPVSFLLFLSDQYKVWTKVIRLHF**TFPFAIF 45
           FHFH  +  P      +    KVW K    H    FPFA +
Sbjct: 4   FHFHTKTLDPSDLRQLMLPASKVWLKT-HFHLKFRFPFAAY 43


>At5g13940.1 68418.m01630 hypothetical protein 
          Length = 395

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 198 FTKKT-VYTQTYPTKLIPAAPRKACCFYCS*STVHKIYSISSYAKQECGYL 347
           F  KT V+ ++Y + L+P+  R   C Y + ST H +  IS   +++  Y+
Sbjct: 55  FADKTWVWDRSYESLLLPSQNRYNPCPYLALSTHHHMIDISIETEKDSLYI 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,514
Number of Sequences: 28952
Number of extensions: 273171
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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