BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte11b17 (642 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g28980.1 68418.m03585 hypothetical protein contains Pfam prof... 30 1.1 At4g28530.1 68417.m04082 no apical meristem (NAM) family protein... 29 3.5 At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 28 4.6 At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase fam... 28 4.6 At5g36070.1 68418.m04345 hypothetical protein 28 6.1 At4g19280.1 68417.m02842 hypothetical protein 28 6.1 At1g35080.1 68414.m04347 hypothetical protein 28 6.1 At1g03106.1 68414.m00287 expressed protein 28 6.1 At5g13940.1 68418.m01630 hypothetical protein 27 8.0 >At5g28980.1 68418.m03585 hypothetical protein contains Pfam profile PF02721: Domain of unknown function DUF223 Length = 354 Score = 30.3 bits (65), Expect = 1.1 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 248 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFH 156 W +R R Y F +DLF D LMFH + Sbjct: 313 WEFYRMYKRRYYKF--SEVDLFADKLMFHIN 341 >At4g28530.1 68417.m04082 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; No apical meristem gene (NAM), required for pattern formation in embryos and flowers-Petunia hybrida, PATCHX:E205713 Length = 352 Score = 28.7 bits (61), Expect = 3.5 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 577 PNKPYAIQFNHLFRIYYCPNLNPKKDTVLNICMIVNK 467 PN H FR+ CPN+ PK+D VL C + NK Sbjct: 139 PNGIKTTWIMHEFRLE-CPNIPPKEDWVL--CRVFNK 172 >At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains Pfam profile: PF02362 B3 DNA binding domain; identical to cDNA auxin response factor 4 (ARF4) GI:4102597 Length = 788 Score = 28.3 bits (60), Expect = 4.6 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +2 Query: 155 YGSETSSYRRTNQSVYKKNCIHADLPNEIDSSGTKKG 265 +G ET + N+ N + ADLP +ID G +KG Sbjct: 597 FGEETRKFDAQNEGGLPNN-VTADLPFKIDMMGKQKG 632 >At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase family protein similar to SP|Q92535 Phosphatidylinositol-glycan biosynthesis, class C protein (PIG-C) {Homo sapiens} Length = 303 Score = 28.3 bits (60), Expect = 4.6 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = -1 Query: 633 YNLYSLHTLNFLIFMMTIVQIN 568 Y++Y+LH L FL+F+ ++ +N Sbjct: 250 YSIYALHRLFFLVFLSLVLLVN 271 >At5g36070.1 68418.m04345 hypothetical protein Length = 224 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 248 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFH 156 W + R Y F +DLF D LMFH + Sbjct: 143 WEFYSMYKRRYYKF--SEVDLFADKLMFHIN 171 >At4g19280.1 68417.m02842 hypothetical protein Length = 254 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 248 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFH 156 W + R Y F +DLF D LMFH + Sbjct: 204 WEFYSMYKRRYYKF--SEVDLFADKLMFHIN 232 >At1g35080.1 68414.m04347 hypothetical protein Length = 386 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 248 WNQFRWVSLRVYSFFCKRIDLFVDSLMFHFH 156 W + R Y F +DLF D LMFH + Sbjct: 305 WEFYSMYKRRYYKF--SEVDLFADKLMFHIN 333 >At1g03106.1 68414.m00287 expressed protein Length = 65 Score = 27.9 bits (59), Expect = 6.1 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = -2 Query: 167 FHFHIDSCKPVSFLLFLSDQYKVWTKVIRLHF**TFPFAIF 45 FHFH + P + KVW K H FPFA + Sbjct: 4 FHFHTKTLDPSDLRQLMLPASKVWLKT-HFHLKFRFPFAAY 43 >At5g13940.1 68418.m01630 hypothetical protein Length = 395 Score = 27.5 bits (58), Expect = 8.0 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = +3 Query: 198 FTKKT-VYTQTYPTKLIPAAPRKACCFYCS*STVHKIYSISSYAKQECGYL 347 F KT V+ ++Y + L+P+ R C Y + ST H + IS +++ Y+ Sbjct: 55 FADKTWVWDRSYESLLLPSQNRYNPCPYLALSTHHHMIDISIETEKDSLYI 105 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,545,514 Number of Sequences: 28952 Number of extensions: 273171 Number of successful extensions: 660 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 648 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 660 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1324661040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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