Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b13
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    26   2.4  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   2.4  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   2.4  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   5.5  

>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 159 PLLINSSYSDSTL*TSNYGQF*RTWPALNDTATLNLFKKSLEEAVA 22
           P+LIN + +     ++  G     WPA++ T   NLF  +LE+  A
Sbjct: 170 PMLINVAKNKGV--SAYIGNGMNCWPAVHRTDAANLFVLALEKETA 213


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 173 LNNFKQKYLYRVLEVSCFKRDLG 241
           L +F  ++  R+LE+SC   D+G
Sbjct: 368 LRHFSSRFKERILEMSCVDADIG 390


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 12  RKISPLLPPKIF*RDSMSPCRLEQAMSSKTDHNLKSKGLNLNMKN 146
           RK+S  LP +IF +D     RL++  + +   NL +  +N    N
Sbjct: 446 RKLSEQLPNRIFAQDPHPSPRLKKEETHENGSNLTNDSVNSYFSN 490


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 140 EELINSG*CNFL--NNFKQKYLYRVLEVSCFK 229
           EEL+ +G   ++  +NF  +YL RVL+++  K
Sbjct: 152 EELLETGKVRYIGISNFNNEYLDRVLKIAKVK 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,556
Number of Sequences: 5004
Number of extensions: 27550
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)