Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b12
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    41   1e-05
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    41   1e-05
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    41   1e-05
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    38   5e-05

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 16  EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 62


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 16  EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 62



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 92  EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 138



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 168 EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 214



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 244 EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 290



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 320 EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 366



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 472 EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 518



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 548 EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 594



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 624 EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 670



 Score = 38.3 bits (85), Expect = 5e-05
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+ +   F GK   D  TL+D N++
Sbjct: 396 EVEPSDTIENVKAKIQDKEGIPPDQQRSI---FAGKQLEDGRTLSDYNIQ 442


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+L+   F GK   D  TL+D N++
Sbjct: 16  EVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQ 62


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 38.3 bits (85), Expect = 5e-05
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+ PSD++  +K  I++  G+ PD+Q+ +   F GK   D  TL+D N++
Sbjct: 64  EVEPSDTIENVKAKIQDKEGIPPDQQRSI---FAGKQLEDGRTLSDYNIQ 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,867
Number of Sequences: 336
Number of extensions: 2961
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)