Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b12
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    53   4e-08
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   1.8  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.8  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   2.3  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   5.4  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   5.4  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   7.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.2  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   9.5  

>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 25/78 (32%), Positives = 49/78 (62%)
 Frame = +1

Query: 88  IKLSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLA 267
           I +++RW GK++++ E+ P+++ + LK  + + T V P+RQK++    +G    D+  L 
Sbjct: 2   IPIAIRWQGKKYDL-EIEPNETGSTLKHQLYSLTQVPPERQKVI---VKGGQLKDDVLLG 57

Query: 268 DLNLKPNLKIMMMGSLEE 321
            + +KPN  ++MMG+  E
Sbjct: 58  SVGIKPNATLLMMGTAGE 75


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = -3

Query: 332  PTMASSNEPIIIIFKLGLRFRSASVQLSVAT-LPSNFTFSNFCLSGRTPVAFSIAIFNIA 156
            P ++  N+   II  + L  RS S ++ V   LP +  +    + G+   + S+A+  + 
Sbjct: 1266 PFLSVENDDKSIIINVELYLRSVSSKVKVVFGLPIDTIYQTTEV-GKFYASTSVAVKQMY 1324

Query: 155  TESEGDS--SGISNSL 114
             ESEGDS  S + N+L
Sbjct: 1325 AESEGDSYVSEVLNTL 1340


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 185 AFSIAIFNIATESEGDSSGISNSLPFHLTLNFIGLSFISH 66
           AF +   +++     +SS ++NS PF+ T+N    S + H
Sbjct: 764 AFGLVDPDVSDGKSRESSSLNNSTPFNPTVNIDPASILEH 803


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 WNGKEFEIPELSPSDSVAMLKIAIENA 186
           WNG   + P+ +PS  V + K A+E A
Sbjct: 12  WNGFAAQTPQNTPSSDVHLSKAALEKA 38


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 97  SVRWNGKEFEIP 132
           + RWNGKEFE P
Sbjct: 150 TTRWNGKEFEEP 161


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 67  TFFVNNFYLKSCDYNNM 17
           TF VN+F +  C+YNN+
Sbjct: 240 TFPVNSFSIDGCEYNNV 256


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/63 (23%), Positives = 24/63 (38%)
 Frame = +1

Query: 82  NPIKLSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCT 261
           NP  +  +    E+E+P+L P D V +           R   Q++    F   +  DN  
Sbjct: 264 NPNNIFKKIMSLEYELPKLLPPDIVPLFSHLFRIQPSDRSTTQQIKQFPFFATITWDNLW 323

Query: 262 LAD 270
             D
Sbjct: 324 TQD 326


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 261 TGRSKSQAQFENYDDGFIRRGHSGCKDQTR 350
           +G++   AQF  Y+DG+ R G  GC    R
Sbjct: 519 SGKTTQLAQFL-YEDGYHRNGMIGCTQPRR 547


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 243 SNRQL-YTGRSKSQAQFENYDDG 308
           SNR+L  T R+K +A FE+ +DG
Sbjct: 283 SNRKLDLTSRAKRRANFEDVNDG 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,045
Number of Sequences: 5004
Number of extensions: 48603
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)