Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b12
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1524 - 37980345-37980587,37980671-37980845,37980938-379810... 149 1e-36
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 46 3e-05
05_05_0090 - 22310424-22310489,22310768-22310871,22312048-22312198 43 2e-04
01_06_1230 + 35575840-35576020,35576122-35576170,35576365-355764... 37 0.016
08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137 35 0.049
10_08_0470 - 18151326-18151769 32 0.46
08_02_1470 - 27350173-27350643,27350721-27351167 28 5.6
05_06_0228 + 26570066-26571352 28 5.6
02_05_0912 - 32689665-32690007,32690117-32690275,32690380-326905... 28 7.4
06_01_0868 - 6606913-6607000,6607516-6608010,6610313-6610761,661... 27 9.8
>01_06_1524 -
37980345-37980587,37980671-37980845,37980938-37981001,
37981080-37981194,37982262-37982406,37984671-37984981
Length = 350
Score = 149 bits (362), Expect = 1e-36
Identities = 79/185 (42%), Positives = 106/185 (57%)
Frame = +1
Query: 94 LSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADL 273
L +W G ++ + + D++ LK I TGV P RQKLL KF+ D+ ++ +
Sbjct: 34 LVAKWKGNDYTVRVVG-DDTLGELKRRICEVTGVLPKRQKLLYPKFKLNECKDSELISSI 92
Query: 274 NLKPNLKIMMMGSLEEAIVGARTKPXXXXXXXXXXXXXXXXXXXXXXXYIAKINKRIRDY 453
KPN+KI M+G++E+ I + Y K+ +R Y
Sbjct: 93 PFKPNVKINMIGTVEDEIF-VDQEDDPEILNDYEIGQNEVTAIKDKDVYKQKLKRRASQY 151
Query: 454 KINVLNEPRPGKKLLVLDIDYTLFDHRSVAETGYELMRPFLHVFLTSAYEDYDIVIWSAT 633
KI +LN R GKKLLVLDIDYTLFDHRS AE ELMRP+LH FL++AY +YDI+IWSAT
Sbjct: 152 KIKILNPCRKGKKLLVLDIDYTLFDHRSAAENPIELMRPYLHEFLSAAYSEYDIMIWSAT 211
Query: 634 GMKWI 648
MKW+
Sbjct: 212 SMKWV 216
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +1
Query: 94 LSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADL 273
+SV+W + F E+ S + K + TGV P+RQK++ +G + D+ + L
Sbjct: 4 VSVKWQKETFPGIEIDTSQPPVVFKTQLYTLTGVPPERQKIM---VKGGILKDDADWSTL 60
Query: 274 NLKPNLKIMMMGSLEEAIVGARTKP 348
+K K+MM+G+ +E + P
Sbjct: 61 GVKDGQKLMMIGTADEIVKAPEKGP 85
>05_05_0090 - 22310424-22310489,22310768-22310871,22312048-22312198
Length = 106
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +1
Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
E+ SD++ +K I++ G+ PD+Q+L+ F GK D CTLAD N++
Sbjct: 32 EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGCTLADYNIQ 78
>01_06_1230 +
35575840-35576020,35576122-35576170,35576365-35576441,
35576883-35577145,35577241-35577387,35578569-35578766
Length = 304
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +1
Query: 163 LKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLKPNLKIMMMGSLEEAIVGART 342
LK + ATGV P+RQ+L F GK +DN L +K K++++ A V R
Sbjct: 105 LKGVLTQATGVEPERQRLF---FRGKEKSDNEFLHTAGVKDGAKLLLLEKPAPANVEQRA 161
Query: 343 KP 348
+P
Sbjct: 162 EP 163
>08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137
Length = 174
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATD-NCTLADLNL 279
E+ PSD++ +K I++ G+R D+Q L++V K D TLAD ++
Sbjct: 107 EVRPSDTIDDVKAKIQDKVGIRSDQQHLVDVSAGSKQLDDGGSTLADYDI 156
>10_08_0470 - 18151326-18151769
Length = 147
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 136 LSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLKPNLKIMMMGSL 315
+ PSD+V +K+ + + G+ PD+Q L+ F+G D TL ++ + ++G +
Sbjct: 22 MEPSDTVESVKVKLVDKEGLPPDQQPLI---FQGHQLDDGHTLIYYGIQEESTLHLLGRI 78
>08_02_1470 - 27350173-27350643,27350721-27351167
Length = 305
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 88 IKLSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLL 219
I++ V++NG EI ++ S LK + TG+ PD QK++
Sbjct: 42 IRVKVKYNGVYHEI-YINSQASFGELKKLLSEKTGLHPDDQKVV 84
>05_06_0228 + 26570066-26571352
Length = 428
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 184 ATGVRPDRQKLLNVKFEGKVATDNCTLADLN-LKPNLKIMMMGSLEEAIVGA 336
A G + RQ LLN+K +G D LA +N + PN ++ G E AIV A
Sbjct: 107 AVGGQARRQALLNLKIDGFQTLDLPNLARVNSVYPN-EVNPNGDREMAIVAA 157
>02_05_0912 -
32689665-32690007,32690117-32690275,32690380-32690573,
32690669-32690861,32690956-32692169
Length = 700
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 7 VYVSCCCSHSFLDKSYSQKMCDINDNPIKL--SVRWNGKEFEIPELSPSDSVAMLK 168
+Y C H +D+S++ C +N P +RW IP L+PSD + L+
Sbjct: 366 LYPEGSCPH--IDESFN---CPLNGRPDNAYQRLRWQPSGCSIPRLNPSDMLERLR 416
>06_01_0868 -
6606913-6607000,6607516-6608010,6610313-6610761,
6610863-6610979,6611892-6612863
Length = 706
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 454 KINVLNEPRPGKKLLVLDIDYTLF--DHRSVAETGYELMR 567
KI ++ + RPG +L + D D L +++V++ G +L+R
Sbjct: 275 KIGIVEKIRPGMRLFLYDFDLKLLYGVYKAVSKGGLDLVR 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,623,055
Number of Sequences: 37544
Number of extensions: 295970
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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