Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b12
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 34 0.10
Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 34 0.10
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 34 0.10
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting... 31 0.71
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting... 31 0.71
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting... 31 0.71
Z32679-3|CAA83596.1| 401|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF098993-7|ABN43095.1| 525|Caenorhabditis elegans Hypothetical ... 29 2.2
AF098993-6|AAC67469.2| 562|Caenorhabditis elegans Hypothetical ... 29 2.2
Z81063-6|CAB02957.2| 296|Caenorhabditis elegans Hypothetical pr... 28 6.6
>Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 94 LSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADL 273
++V+W KE + E+ S + K + T V P+RQK++ + G+ D+ +
Sbjct: 4 VNVKWQ-KEKYVVEVDTSAPPMVFKAQLFALTQVVPERQKVVIM---GRTLGDD-DWEGI 58
Query: 274 NLKPNLKIMMMGSLEE 321
+K N+ IMMMGS+ E
Sbjct: 59 TIKENMTIMMMGSVGE 74
>Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 94 LSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADL 273
++V+W KE + E+ S + K + T V P+RQK++ + G+ D+ +
Sbjct: 4 VNVKWQ-KEKYVVEVDTSAPPMVFKAQLFALTQVVPERQKVVIM---GRTLGDD-DWEGI 58
Query: 274 NLKPNLKIMMMGSLEE 321
+K N+ IMMMGS+ E
Sbjct: 59 TIKENMTIMMMGSVGE 74
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 94 LSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADL 273
++V+W KE + E+ S + K + T V P+RQK++ + G+ D+ +
Sbjct: 4 VNVKWQ-KEKYVVEVDTSAPPMVFKAQLFALTQVVPERQKVVIM---GRTLGDD-DWEGI 58
Query: 274 NLKPNLKIMMMGSLEE 321
+K N+ IMMMGS+ E
Sbjct: 59 TIKENMTIMMMGSVGE 74
>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
protein protein8, isoform a protein.
Length = 1132
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 360 IVHFWFGPCTHYGLF**THHHNFQIGLEI*IGQCTIVCCY----FTFK 229
++ W G C HYG F T+ GL++ + C+ C + FTFK
Sbjct: 46 VIQKWEGGCFHYGYFSFTNPLKVNSGLDLLLIFCSFPCLFDVLVFTFK 93
>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
protein protein8, isoform b protein.
Length = 1780
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 360 IVHFWFGPCTHYGLF**THHHNFQIGLEI*IGQCTIVCCY----FTFK 229
++ W G C HYG F T+ GL++ + C+ C + FTFK
Sbjct: 46 VIQKWEGGCFHYGYFSFTNPLKVNSGLDLLLIFCSFPCLFDVLVFTFK 93
>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
protein protein8, isoform c protein.
Length = 1697
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 360 IVHFWFGPCTHYGLF**THHHNFQIGLEI*IGQCTIVCCY----FTFK 229
++ W G C HYG F T+ GL++ + C+ C + FTFK
Sbjct: 46 VIQKWEGGCFHYGYFSFTNPLKVNSGLDLLLIFCSFPCLFDVLVFTFK 93
>Z32679-3|CAA83596.1| 401|Caenorhabditis elegans Hypothetical
protein C05B5.3 protein.
Length = 401
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -3
Query: 332 PTMASSNE-PIIIIFKLGL-RFRSASVQLSVATLPSNFTFSNFCLSGRTP-VAFSIAIFN 162
P +SSN+ P+I I + G +++++ V S T P+ F F N G+ FS FN
Sbjct: 101 PGSSSSNQQPVIYIARAGSDKYKNSEVTTSTPT-PNGFNFGNGFQGGQNQNTGFSSGFFN 159
Query: 161 IATESEGDSSGISN 120
++ + +N
Sbjct: 160 NQNQNSNQNLNQNN 173
>AF098993-7|ABN43095.1| 525|Caenorhabditis elegans Hypothetical
protein T10B11.7b protein.
Length = 525
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 236 PSNFTFSNFCLSGRTPVAFSIAIFNIATESEGDSS 132
PS+ TF FC PV F IF A + E + S
Sbjct: 132 PSHHTFCVFCSESYPPVEFHFCIFMTAAQKEVNQS 166
>AF098993-6|AAC67469.2| 562|Caenorhabditis elegans Hypothetical
protein T10B11.7a protein.
Length = 562
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 236 PSNFTFSNFCLSGRTPVAFSIAIFNIATESEGDSS 132
PS+ TF FC PV F IF A + E + S
Sbjct: 169 PSHHTFCVFCSESYPPVEFHFCIFMTAAQKEVNQS 203
>Z81063-6|CAB02957.2| 296|Caenorhabditis elegans Hypothetical
protein F15D3.8 protein.
Length = 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 172 AIENATGVRPDRQKLLNVKFEGKV 243
++ENA ++ R+K+LN +FEG +
Sbjct: 26 SLENAAEMKDSRRKILNKEFEGAI 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,725
Number of Sequences: 27780
Number of extensions: 271540
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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