Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b11
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    31   0.13 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    30   0.18 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    29   0.54 
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    28   0.71 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   1.6  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    27   2.2  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   3.8  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.0  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.0  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   5.0  
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   8.8  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   8.8  

>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 314 PQQDPIKFTYKVHRPKNDTQFCRFITETINSLKNDEIMKPVEAEVQKMLYG 466
           P +D ++F Y +   K  TQF +   E +N+L N  +++ V  +  K ++G
Sbjct: 408 PDEDIVRFPYAILEVKLQTQFGQDPPEWVNNLVNSHLVEAV-PKFSKFIHG 457


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +2

Query: 137 KSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVN 298
           KSRV   IR++   SK+++   + K  HL +   + +E     LSR HLE+NVN
Sbjct: 69  KSRVGDRIRDYASASKQVQNEYHQKSNHLREKFAQVLE-----LSR-HLEDNVN 116


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 14/65 (21%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 116  ENFEKETKSRVAWFIRNHEEISKRL-KFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENN 292
            +++++  KS V W   +++++SKR  +  + Y    L  ++R   + ++ +L++   E +
Sbjct: 2206 QDWDESDKSVVCWIEEHNDDLSKRTQELKSTYYSERLSKLLRSDRKGMIDSLAQVLTELD 2265

Query: 293  VNRRK 307
             N +K
Sbjct: 2266 ENEKK 2270


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +2

Query: 125 EKETKSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRR 304
           E ET S +   +   E +    ++S N   YHL+DVI   I  +L  +  Q +E ++ RR
Sbjct: 153 EPETNSLIRMDVGIDECLHIEFEYSKNK--YHLKDVIIGKIYFILVRIKVQRMEVSIIRR 210

Query: 305 K 307
           +
Sbjct: 211 E 211


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 116  ENFEKETKSRVAWFIRNHEEISKRLKFSANYKGYHLE 226
            EN  K++++RVA  +  ++ ++  L    N +  HLE
Sbjct: 1003 ENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLE 1039


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 462 YNIFCTSASTGFIISSFFKLLIVSVINLQNCVSFFGL*TLYV 337
           +++ C S    F++    +L ++ VI   N +S F   TLY+
Sbjct: 135 FDVHCNSFFPSFVLLYVIQLFLLPVITRDNFISLFMGNTLYL 176


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 77  LDYSNPYIIKFLSENFEKETKSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIE 250
           LD SN   IK   ++ ++E K+ +        +IS  L  +  Y+G     +I KP+E
Sbjct: 549 LDDSNTESIKKRFDSLKEEAKANLEEQGFTESQISYELFLNCRYQGTDSTLMISKPLE 606


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 341 YKVHRPKNDTQFCRFITETINSLK 412
           YKV+    DT +C+++T +   LK
Sbjct: 30  YKVYFVTTDTFYCKYLTASFTGLK 53


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 329 IKFTYKVHRPKNDTQFCRFITETI---NSLKNDEIMKPVEAEVQKMLYGDLPN 478
           + F  K+   KN+   C   ++ I   +   +  ++KPV+   QK L  DLP+
Sbjct: 529 LSFLMKLSTHKNERIACLSASQLITVCHIFSDTTLIKPVKELFQKYLVNDLPS 581


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 257 LRTLSRQHLENNVNRRKVA 313
           L TLS  H+ N +NRR  A
Sbjct: 596 LSTLSNHHVNNEINRRSFA 614


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 429 FIISSFFKLLIVSVINLQNCVSFFGL 352
           F+   ++ LLI++ I   +C+ + GL
Sbjct: 15  FVFPFYYFLLIITEIGFSSCIQYSGL 40


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 285  SKCCLERVLSNISIGFRITSSKWYPL*FAENLSLLE 178
            S  C   VL +++  F    SKW+   F+ NL LL+
Sbjct: 1207 SNACSSNVLEHVASSF----SKWHSKVFSRNLRLLK 1238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,017
Number of Sequences: 5004
Number of extensions: 39272
Number of successful extensions: 116
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)