Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b11
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222...    32   0.31 
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    28   5.1  
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971...    27   6.7  
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    27   6.7  
11_06_0454 + 23786984-23786986,23787062-23787136,23787242-237873...    27   8.8  

>05_04_0066 +
           17621532-17621619,17621658-17621820,17621864-17622233,
           17622548-17623009
          Length = 360

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 20  RFYFTLNI*YHI*K*IVMPLDYSNPYIIKFLSENFEKETKSRVAW 154
           R+ F LN  Y +    ++P DYS P  IKF  E ++KE   R +W
Sbjct: 223 RYLFLLNNSYVVQYQFLVPSDYSPPSEIKFHYEQYQKE-YMRASW 266


>03_05_0642 -
           26346260-26346367,26347902-26348162,26348542-26349849,
           26349960-26350178,26350241-26350300,26352159-26352215,
           26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 345 LYVNFIGSC*GATFRRLTLFSKCCLERVLSNISIGFRITSS---KWYPL*FAENLSLLEI 175
           + V  +G C  A   R T+  + C E      S GF  + +   +W PL  +  +S+L++
Sbjct: 339 MIVELVGCCDRALASRSTIHRQFCFEPQHLRSSFGFSSSETLQYQWMPLIKSPVMSILDV 398

Query: 174 S 172
           S
Sbjct: 399 S 399


>12_02_0439 +
           19096711-19096713,19096819-19096893,19097037-19097111,
           19097225-19097297,19097536-19097580,19098217-19098328,
           19098794-19098866,19099178-19099222,19100216-19100271,
           19100370-19100545,19101289-19101476
          Length = 306

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 307
           ++F  +   YHL+DVI   I  LL  +  +++E  V RR+
Sbjct: 178 IEFEYSKSKYHLKDVIIGKIYFLLVRIKIKNMELEVRRRE 217


>11_06_0388 +
           23048576-23051546,23051830-23052371,23052444-23052517,
           23053006-23053090,23053281-23053367,23053585-23053657,
           23053882-23053925,23054041-23054169,23054301-23054402,
           23054529-23054585
          Length = 1387

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +2

Query: 224 EDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQQDPIKF-TYKVHRPKNDTQFCRFITETI 400
           E +I +PIE    T S + +   ++ +      +PI+  + K+     DTQ  + I++ I
Sbjct: 352 EKIISEPIE----TQSEKIISEPIDAQSEKIISEPIEAQSEKIISEPIDTQTEKIISDPI 407

Query: 401 NSLKNDEIMKPVEAEVQKML 460
            +     I +P++A+ +K++
Sbjct: 408 EAQSEKIISEPIDAQTEKII 427


>11_06_0454 +
           23786984-23786986,23787062-23787136,23787242-23787316,
           23787534-23787606,23787965-23788009,23788398-23788509,
           23788640-23788706,23789010-23789054,23790138-23790193,
           23790280-23790455,23790584-23790710,23791384-23791426
          Length = 298

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 307
           ++F  +   YHL+DVI   I  LL  +  +++E  + RR+
Sbjct: 176 IEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRE 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,987,376
Number of Sequences: 37544
Number of extensions: 189651
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)