Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b11
(514 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022505-1|AAH22505.1| 327|Homo sapiens vacuolar protein sortin... 30 4.1
AL596223-4|CAH71501.1| 327|Homo sapiens vacuolar protein sortin... 30 4.1
AL442635-2|CAH71779.1| 327|Homo sapiens vacuolar protein sortin... 30 4.1
AK022992-1|BAB14351.1| 327|Homo sapiens protein ( Homo sapiens ... 30 4.1
AF175266-1|AAF89954.1| 327|Homo sapiens vacuolar sorting protei... 30 4.1
AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form p... 30 4.1
BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sortin... 30 5.5
BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sortin... 30 5.5
BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sortin... 30 5.5
AK023791-1|BAB14681.1| 348|Homo sapiens protein ( Homo sapiens ... 30 5.5
AB023136-1|BAA76763.1| 710|Homo sapiens KIAA0919 protein protein. 30 5.5
AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isofor... 29 7.2
>BC022505-1|AAH22505.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKV 310
++F N YHL+DVI I LL + QH+E + ++++
Sbjct: 176 IEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEI 216
>AL596223-4|CAH71501.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKV 310
++F N YHL+DVI I LL + QH+E + ++++
Sbjct: 176 IEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEI 216
>AL442635-2|CAH71779.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKV 310
++F N YHL+DVI I LL + QH+E + ++++
Sbjct: 176 IEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEI 216
>AK022992-1|BAB14351.1| 327|Homo sapiens protein ( Homo sapiens
cDNA FLJ12930 fis, clone NT2RP2004816, highly similar to
H58 PROTEIN. ).
Length = 327
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKV 310
++F N YHL+DVI I LL + QH+E + ++++
Sbjct: 176 IEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEI 216
>AF175266-1|AAF89954.1| 327|Homo sapiens vacuolar sorting protein
26 protein.
Length = 327
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKV 310
++F N YHL+DVI I LL + QH+E + ++++
Sbjct: 176 IEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEI 216
>AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form
protein.
Length = 1721
Score = 30.3 bits (65), Expect = 4.1
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +2
Query: 170 EEISKRLKFSANYKGYHLEDVIRKPIEMLLR--TLSRQHLENNVNRRKVAPQQDPIKFTY 343
+E KRL+ KG L I KP++ + R + + LEN P+ P ++
Sbjct: 1354 KEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILEN-------TPENHP-DHSH 1405
Query: 344 KVHRPKNDTQFCRFITETINSLKNDEIMKPVEAEVQ 451
H + + C + E + +N + ++ ++A VQ
Sbjct: 1406 LKHALEKAEELCSQVNEGVREKENSDRLEWIQAHVQ 1441
>BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 307
++F N YHL+DVI I LL + +H+E ++ +R+
Sbjct: 174 IEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRE 213
>BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 307
++F N YHL+DVI I LL + +H+E ++ +R+
Sbjct: 174 IEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRE 213
>BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 307
++F N YHL+DVI I LL + +H+E ++ +R+
Sbjct: 174 IEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRE 213
>AK023791-1|BAB14681.1| 348|Homo sapiens protein ( Homo sapiens
cDNA FLJ13729 fis, clone PLACE3000121, weakly similar to
VESICULAR TRAFFIC CONTROL PROTEIN SEC15. ).
Length = 348
Score = 29.9 bits (64), Expect = 5.5
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +2
Query: 92 PYIIKFLSENFEKETKSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLL-RTL 268
P+ KF F + +++ FI + S+ L S+ ++D+IRK +LL RTL
Sbjct: 20 PFPKKFPFSEFVPKVYNQIKEFIYACLKFSEDLHLSST----EVDDMIRKSTNLLLTRTL 75
Query: 269 SRQHLENNVNRRKVAPQQDPIKFTYKVHRPKNDTQFCRFITETINSLKN 415
S L+N + R+ + + H K+ C+++ E I ++ N
Sbjct: 76 SNS-LQNVIKRKNIGLTELVQIIINTTHLEKS----CKYLEEFITNITN 119
>AB023136-1|BAA76763.1| 710|Homo sapiens KIAA0919 protein protein.
Length = 710
Score = 29.9 bits (64), Expect = 5.5
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +2
Query: 92 PYIIKFLSENFEKETKSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLL-RTL 268
P+ KF F + +++ FI + S+ L S+ ++D+IRK +LL RTL
Sbjct: 521 PFPKKFPFSEFVPKVYNQIKEFIYACLKFSEDLHLSST----EVDDMIRKSTNLLLTRTL 576
Query: 269 SRQHLENNVNRRKVAPQQDPIKFTYKVHRPKNDTQFCRFITETINSLKN 415
S L+N + R+ + + H K+ C+++ E I ++ N
Sbjct: 577 SNS-LQNVIKRKNIGLTELVQIIINTTHLEKS----CKYLEEFITNITN 620
>AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isoform
protein.
Length = 1721
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +2
Query: 170 EEISKRLKFSANYKGYHLEDVIRKPIEMLLR--TLSRQHLENNVNRRKVAPQQDPIKFTY 343
+E KRL KG L I KP++ + R + + LEN P+ P ++
Sbjct: 1354 KEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILEN-------TPENHP-DHSH 1405
Query: 344 KVHRPKNDTQFCRFITETINSLKNDEIMKPVEAEVQ 451
H + + C + E + +N + ++ ++A VQ
Sbjct: 1406 LKHALEKAEELCSQVNEGVREKENSDRLEWIQAHVQ 1441
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,425,379
Number of Sequences: 237096
Number of extensions: 1179271
Number of successful extensions: 6489
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6489
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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