Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b10
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 31 0.70
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290... 31 0.93
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 31 0.93
03_02_0576 - 9587698-9588636 30 1.6
10_06_0187 - 11598240-11599508 30 2.2
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 29 5.0
02_02_0373 - 9534016-9534226,9534251-9534297,9534453-9534500,953... 29 5.0
10_08_0844 - 20963774-20963792,20964111-20964256,20964787-209649... 28 6.6
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 28 6.6
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 28 6.6
04_04_1291 - 32404716-32404946,32405377-32405478,32405731-324059... 28 6.6
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 6.6
03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639 28 6.6
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 8.7
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 549 RGVRERAMPAPRDPEQAEGVGDEIRRSCNAHQYVDGVQRASVRTG 683
RGVR A+ RDP +A +G +R ++ +DG++R S R G
Sbjct: 104 RGVRVPALSCFRDPVRAREIGKRVRA---LNRRLDGIERRSSRFG 145
>12_02_1084 -
25928373-25928426,25928551-25928652,25928913-25929039,
25929292-25930730,25931430-25931447
Length = 579
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +1
Query: 94 QDNR-CENHENIEICEQDNRVFDVT-QAQELINKLEDYKCSSVDLEKQLLELETEV-RHI 264
+DN C+N+++ E+C ++R+ + + ++L L D K + L Q+L+ E ++ +H
Sbjct: 200 EDNPYCDNYDDAEVCGFEDRIGSLLHENEQLQGLLADKKMVAKHLSLQVLDAERKMAQHS 259
Query: 265 QVEMESVK 288
E++ VK
Sbjct: 260 LSELKLVK 267
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +1
Query: 85 VVVQDNRCENHENIEICEQDNRVFDVTQAQ------ELINKLEDYKCSSVDLEKQLLELE 246
V +++N+ E+H + ++D+ + A+ ++ + + + + DL+KQ LE+
Sbjct: 890 VELKENQLESHRRLSEVQEDSEALRRSNAKLQATVDHVVEECKSLQTLTADLKKQKLEVH 949
Query: 247 TEVRHIQVEMESVK 288
H++ E+E K
Sbjct: 950 GYASHLEQELEQSK 963
>03_02_0576 - 9587698-9588636
Length = 312
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = -1
Query: 415 CTWRDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTP 236
C+ R A TL +S EQE L + SVR R+ R P P AA R P
Sbjct: 187 CSGRGAAAAPTTLRSSIEQEKLMDEEEHAASVRQRKSFSGVIKWRPPPAPAAAAARPPPP 246
Query: 235 EA 230
A
Sbjct: 247 PA 248
>10_06_0187 - 11598240-11599508
Length = 422
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 103 RCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMES 282
R +N + + QD R+ Q Q+ N L+ Y+ + Q+ +TE+ H+Q +++
Sbjct: 90 REKNPKPVAATPQDARLLSEIQEQQ--NLLKTYEVMVKKFQSQIQTRDTEITHLQQQIDE 147
Query: 283 VK 288
K
Sbjct: 148 AK 149
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +1
Query: 139 QDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 288
++N V +A+EL +L+D + S + +K+ +LE ++R ++ E+E K
Sbjct: 409 RENLVTSEKKARELEAQLQDEQLVSANNQKKSDKLEMDLRKVKKELEHEK 458
>02_02_0373 -
9534016-9534226,9534251-9534297,9534453-9534500,
9534772-9534972,9535090-9535215,9535386-9535461,
9535617-9535776,9536074-9536182,9537225-9537398
Length = 383
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 133 CEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESV 285
CEQ DV + + +++ E + S + L +LET+V ++ E S+
Sbjct: 134 CEQSTNPLDVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASL 184
>10_08_0844 -
20963774-20963792,20964111-20964256,20964787-20964962,
20965061-20965216,20965287-20967102
Length = 770
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 549 RGVRERAMPAPRDPEQAEGVGDEI 620
RG+ + + PAP PE+ +G+ DE+
Sbjct: 129 RGLIKPSAPAPSQPEEEDGLADEL 152
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 76 DAGVVVQDNRCENHENIEICEQDNRVFDVTQ 168
D GV+ + +R + E I+ICE D V DV++
Sbjct: 118 DGGVLREVSRHSSVEQIDICEIDKMVVDVSK 148
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 76 DAGVVVQDNRCENHENIEICEQDNRVFDV 162
D GV+ + R + ENI+ICE D V DV
Sbjct: 152 DGGVLREIARHASVENIDICEIDQLVIDV 180
>04_04_1291 -
32404716-32404946,32405377-32405478,32405731-32405910,
32406023-32406100,32407501-32407620,32407713-32407805,
32408369-32408443,32408673-32408828,32408957-32409040,
32409773-32410450,32411814-32411877,32411968-32411978
Length = 623
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 352 LRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQTN 206
LRR V+ Y +RP R R +S P P PRS + +A+ + N
Sbjct: 2 LRRCVRDLYPLRPLRRIPRPISSEVP-SPAFLRPRSKSTKASQQSSTQN 49
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 413 HVAGHGGHTPHALDIGGTGGPP 348
+ GHG H HA D G GG P
Sbjct: 152 YYGGHGHHQGHAQDGGAVGGDP 173
>03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639
Length = 649
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 79 AGVVVQD--NRCEN-HENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLE 225
+G +D +RCE H+ ++ICE+D FD + E L + + LE
Sbjct: 598 SGTTTEDVISRCEYLHDAVDICEEDCVCFDASWDVECAEFLNSRAANKIRLE 649
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 124 IEICEQDNRVFDVT--QAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEM 276
+E+ DN ++ Q +EL ++L ++ + DLEK+LLE++ E + E+
Sbjct: 1208 VEVPVVDNAKVELLTRQNKELEDELVTFRTKAEDLEKRLLEVQKESDELSREI 1260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,412
Number of Sequences: 37544
Number of extensions: 305984
Number of successful extensions: 1153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -