Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b06
(576 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38780| Best HMM Match : Astacin (HMM E-Value=0) 31 0.89
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_19545| Best HMM Match : VWA (HMM E-Value=0.00034) 29 2.7
SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3) 29 2.7
SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12) 29 2.7
SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08) 29 3.6
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_59628| Best HMM Match : I-set (HMM E-Value=5e-21) 28 4.8
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 28 4.8
SB_58895| Best HMM Match : SRCR (HMM E-Value=0) 27 8.3
SB_38664| Best HMM Match : HC2 (HMM E-Value=0.95) 27 8.3
>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
Length = 1153
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 34 SYISTLWILFCNPKSKMNN-SKF*CKRTNI-QTRWIII 141
S++S LW+L C P S+M C ++ Q+RW ++
Sbjct: 676 SWVSPLWMLTCQPHSRMKEMPNIECPTVSVLQSRWFLL 713
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +3
Query: 225 PKLSGQELAFYQACMQHTRPPDCRCPQ----YSGGEMPQLPPGKEGG 353
P + GQ Y MQH P Q Y G +P PPG+EGG
Sbjct: 974 PGMFGQARYQYPPAMQHAGPFYNSQIQPNMYYDRGSLPVYPPGREGG 1020
>SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 34 SYISTLWILFCNPKSKMNN-SKF*CKRTNI-QTRWIII 141
S++ LW+L C P S+M C ++ Q+RW ++
Sbjct: 85 SWVRPLWMLICQPHSRMKEMPNIECPTVSVLQSRWFLL 122
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 79 KMNN--SKF*CKRTNIQTRWIIISPPTEKIICGRTYLMWVAMGKPQA*LTHQNCLVKN*R 252
K+NN S + N Q R +PP +CG ++ + KP L H+ N +
Sbjct: 606 KLNNRASSLELRENNAQCRQTCRTPPNYAELCGSLWISRITRKKPNYALPHKRVAFSNSQ 665
Query: 253 STKHA 267
+ K A
Sbjct: 666 AKKLA 670
>SB_19545| Best HMM Match : VWA (HMM E-Value=0.00034)
Length = 286
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -3
Query: 352 PPSFP-GGSCGISPPEY--CGHRQSG 284
PPS P GGSCG +PPE CG +G
Sbjct: 114 PPSPPSGGSCGDAPPEEIPCGESVAG 139
>SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)
Length = 787
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 204 FPHRHPHEVSSATDNLFCRW*DNDPSCLYVCP 109
FP+ H VSS T ++F + DN P L P
Sbjct: 277 FPYSLVHRVSSKTSDIFLKTDDNKPKVLLFSP 308
>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
Length = 501
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -1
Query: 555 DLCRSFA*ALETLRSGGCCTALGISIEA----YLKMHWADRSEMLEFQDSQRLARDTVLD 388
+ C+ FA + + GC ALGIS+E+ Y + + D S L D L+ +T+ +
Sbjct: 269 EYCKMFA--VHHTQIQGCAKALGISVESEEEDYQLVDFQDVSNTL-IPDMSHLSAETMKN 325
Query: 387 LGEDPLSHSDSSRPPSQ 337
ED + SSR Q
Sbjct: 326 DEEDDTTPRKSSRQCKQ 342
>SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)
Length = 769
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 464 FR*ASIEIPNAVQHPPERSVSRAQAKDRQRSKQD 565
FR A + P AVQH P+ V +A+ ++ + D
Sbjct: 82 FRLAKLRQPTAVQHKPDTQVQQAKEREMTETSLD 115
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -2
Query: 536 LELWRRFVLEDAVQ-HWVFRL--KLI*KCIGLIVARCWSFRTRSDSHGIQFW 390
L +W + V E +Q W F+ ++ +C L++A C +++ S+ HG +W
Sbjct: 800 LNVWPKAVPEGHIQVGWRFKFPDEVSAECSTLVIAACRNYKMNSELHG--YW 849
>SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 189 GGDGETSGLADTP-KLSGQELAFYQACMQHTRPP-DCRCPQY-SGGE 320
GG G TS +DTP S + L Y AC R C Q+ SGGE
Sbjct: 81 GGSGGTSSSSDTPTSPSSKTLPLYVACHSRARGGLKPLCHQFTSGGE 127
>SB_59628| Best HMM Match : I-set (HMM E-Value=5e-21)
Length = 209
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 224 TKTVWSRISVL--PSMHAAYEAARLPMPAVLWRGDAATAAWEGGR 352
T T+ + +S L S+ A LP+PAV+W+ AT +GGR
Sbjct: 16 TVTIGANVSALRGSSITLTCTAEGLPVPAVVWKKGGATLQ-QGGR 59
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 4.8
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = -1
Query: 450 DRSEMLEFQDSQRLARDTVLDLGED-PLSHSDSSRPPSQAAVAASPLQSTAGIGSRAASY 274
D + ML+++ R+ + LD D P+ DSS P S AA + + + STA +R +
Sbjct: 1392 DPAMMLDYES--RIVSEDNLDKQTDCPMDAPDSSDPTSTAAPSTTTVTSTAVCVARYTN- 1448
Query: 273 AACMLGRTLILDQTVLVCQLGLRFPHRHPHEVSSATDNLFC 151
G ++ D +G ++ RH E S +NL C
Sbjct: 1449 -----GMWVLQD-----IPMGCKYGERH-FETSEKNNNLTC 1478
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +3
Query: 294 RCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNAFLDK 473
+C G + PP EG M + L+P+RV ++P S + A LD+
Sbjct: 1004 KCIDLPGNYSCRCPPDYEGANCETIKMEASVSTVLFPIRVVVRQDSPVSIVRKRAAVLDR 1063
Query: 474 LQS 482
S
Sbjct: 1064 AVS 1066
>SB_58895| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1838
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQPPSFPG--GSC-----GISPPEYCGHRQSG 284
+ +G G + +T FG GPI+ ++ + G C G+S CGH++
Sbjct: 1772 KSLGYPGARSFKTMAYFGRGSGPIVLDNVECRGYEDAIGECPSRGWGVSN---CGHKEDA 1828
Query: 283 GLVC 272
G+VC
Sbjct: 1829 GVVC 1832
>SB_38664| Best HMM Match : HC2 (HMM E-Value=0.95)
Length = 210
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 323 AATAAWEGGRLESE*DNGSSPRSKTVSRAS 412
A W GGR ES + S S++VSR+S
Sbjct: 21 AGVEGWFGGRRESSRSSSSRSSSRSVSRSS 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,279,833
Number of Sequences: 59808
Number of extensions: 479801
Number of successful extensions: 1410
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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