Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b06
(576 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC141862-1|AAI41863.1| 975|Homo sapiens discs, large (Drosophil... 34 0.31
AF119818-1|AAF34345.1| 1019|Homo sapiens discs, large (Drosophil... 34 0.31
AF119817-1|AAF34344.1| 975|Homo sapiens discs, large (Drosophil... 34 0.31
AF047033-1|AAD38322.1| 1214|Homo sapiens sodium bicarbonate cotr... 31 2.2
X60992-1|CAA43306.1| 468|Homo sapiens T cell glycoprotein CD6 p... 31 2.9
U66146-1|AAC51165.1| 592|Homo sapiens CD6e protein. 31 2.9
U66145-1|AAC51164.1| 601|Homo sapiens CD6d protein. 31 2.9
U66144-1|AAC51163.1| 595|Homo sapiens CD6c protein. 31 2.9
U66143-1|AAC51162.1| 635|Homo sapiens CD6b protein. 31 2.9
U66142-1|AAC51161.1| 668|Homo sapiens CD6a protein. 31 2.9
U34625-1|AAA86419.1| 595|Homo sapiens T cell surface glycoprote... 31 2.9
U34624-1|AAA86418.1| 636|Homo sapiens T cell surface glycoprote... 31 2.9
U34623-1|AAA86417.1| 668|Homo sapiens T cell surface glycoprote... 31 2.9
L78838-5|AAL40087.1| 595|Homo sapiens T cell surface glycoprote... 31 2.9
L78838-4|AAL40086.1| 601|Homo sapiens T cell surface glycoprote... 31 2.9
L78838-3|AAL40088.1| 635|Homo sapiens T cell surface glycoprote... 31 2.9
L78838-2|AAL40085.1| 592|Homo sapiens T cell surface glycoprote... 31 2.9
L78838-1|AAL40089.1| 668|Homo sapiens T cell surface glycoprote... 31 2.9
BC030139-1|AAH30139.1| 1143|Homo sapiens NOL6 protein protein. 31 2.9
AL356218-13|CAI13314.1| 699|Homo sapiens nucleolar protein fami... 31 2.9
AL356218-12|CAI13315.1| 1146|Homo sapiens nucleolar protein fami... 31 2.9
AL356218-11|CAI13313.1| 1023|Homo sapiens nucleolar protein fami... 31 2.9
AK131105-1|BAC85155.1| 638|Homo sapiens FLJ00362 protein protein. 31 2.9
AF361081-1|AAL74405.1| 699|Homo sapiens nucleolar RNA-associate... 31 2.9
AF361080-1|AAL74404.1| 1007|Homo sapiens nucleolar RNA-associate... 31 2.9
AF361079-1|AAL74403.1| 1146|Homo sapiens nucleolar RNA-associate... 31 2.9
U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel... 31 3.8
L15297-1|AAA65619.1| 623|Homo sapiens cyclic nucleotide-gated c... 31 3.8
L15296-1|AAA65620.1| 909|Homo sapiens cyclic nucleotide-gated c... 31 3.8
BC078669-1|AAH78669.1| 668|Homo sapiens CD6 molecule protein. 31 3.8
AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor CNG-c... 31 3.8
BC033755-1|AAH33755.1| 639|Homo sapiens CD6 protein protein. 30 5.1
AB052622-1|BAB86306.1| 1250|Homo sapiens hDDM36 protein. 30 5.1
AB046848-1|BAB13454.1| 980|Homo sapiens KIAA1628 protein protein. 30 5.1
U93205-1|AAC25675.1| 241|Homo sapiens nuclear chloride ion chan... 30 6.7
BC067080-1|AAH67080.1| 312|Homo sapiens FCRLB protein protein. 30 6.7
AK055614-1|BAB70971.1| 312|Homo sapiens protein ( Homo sapiens ... 30 6.7
AF338650-1|AAK07661.1| 2641|Homo sapiens PDZ domain-containing p... 30 6.7
AF109197-1|AAD26137.1| 241|Homo sapiens nuclear chloride channe... 30 6.7
AB002298-1|BAA20760.2| 2847|Homo sapiens KIAA0300 protein. 30 6.7
>BC141862-1|AAI41863.1| 975|Homo sapiens discs, large (Drosophila)
homolog-associated protein 2 protein.
Length = 975
Score = 34.3 bits (75), Expect = 0.31
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 361 RLQPPSFPGGSCGISPPEYCGHRQSG 284
R QPP G +CG++PPE C H G
Sbjct: 8 RTQPPLCSGHTCGLAPPEDCEHLHHG 33
>AF119818-1|AAF34345.1| 1019|Homo sapiens discs, large (Drosophila)
homolog-associated protein 2 protein.
Length = 1019
Score = 34.3 bits (75), Expect = 0.31
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 361 RLQPPSFPGGSCGISPPEYCGHRQSG 284
R QPP G +CG++PPE C H G
Sbjct: 52 RTQPPLCSGHTCGLAPPEDCEHLHHG 77
>AF119817-1|AAF34344.1| 975|Homo sapiens discs, large (Drosophila)
homolog-associated protein 2 protein.
Length = 975
Score = 34.3 bits (75), Expect = 0.31
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 361 RLQPPSFPGGSCGISPPEYCGHRQSG 284
R QPP G +CG++PPE C H G
Sbjct: 8 RTQPPLCSGHTCGLAPPEDCEHLHHG 33
>AF047033-1|AAD38322.1| 1214|Homo sapiens sodium bicarbonate
cotransporter 3 protein.
Length = 1214
Score = 31.5 bits (68), Expect = 2.2
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 377 SSPRSKTVSRASRCES*NSNISLRSA-QCIFR*ASIEIPNAVQHPPERSVSRAQAKDRQR 553
S P S ++SR + S +S S R A + + AS +IP V HPPE + A + Q+
Sbjct: 309 SPPSSPSISRLT---SRSSQKSQRQAPELLVSPASDDIPTVVIHPPEEDLEAALKGEEQK 365
Query: 554 SKQD 565
++++
Sbjct: 366 NEEN 369
>X60992-1|CAA43306.1| 468|Homo sapiens T cell glycoprotein CD6
protein.
Length = 468
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>U66146-1|AAC51165.1| 592|Homo sapiens CD6e protein.
Length = 592
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>U66145-1|AAC51164.1| 601|Homo sapiens CD6d protein.
Length = 601
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>U66144-1|AAC51163.1| 595|Homo sapiens CD6c protein.
Length = 595
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>U66143-1|AAC51162.1| 635|Homo sapiens CD6b protein.
Length = 635
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>U66142-1|AAC51161.1| 668|Homo sapiens CD6a protein.
Length = 668
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>U34625-1|AAA86419.1| 595|Homo sapiens T cell surface glycoprotein
CD6 protein.
Length = 595
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>U34624-1|AAA86418.1| 636|Homo sapiens T cell surface glycoprotein
CD6 protein.
Length = 636
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>U34623-1|AAA86417.1| 668|Homo sapiens T cell surface glycoprotein
CD6 protein.
Length = 668
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>L78838-5|AAL40087.1| 595|Homo sapiens T cell surface glycoprotein
CD6 isoform c protein.
Length = 595
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>L78838-4|AAL40086.1| 601|Homo sapiens T cell surface glycoprotein
CD6 isoform d protein.
Length = 601
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>L78838-3|AAL40088.1| 635|Homo sapiens T cell surface glycoprotein
CD6 isoform b protein.
Length = 635
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>L78838-2|AAL40085.1| 592|Homo sapiens T cell surface glycoprotein
CD6 isoform e protein.
Length = 592
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>L78838-1|AAL40089.1| 668|Homo sapiens T cell surface glycoprotein
CD6 isoform c protein.
Length = 668
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>BC030139-1|AAH30139.1| 1143|Homo sapiens NOL6 protein protein.
Length = 1143
Score = 31.1 bits (67), Expect = 2.9
Identities = 30/99 (30%), Positives = 41/99 (41%)
Frame = +3
Query: 165 LWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEMPQLPPGK 344
LWP L GGD ++ L L Q L + H+RPP P++ + P P K
Sbjct: 488 LWPELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPP---VPEWDISQDP--PKHK 542
Query: 345 EGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNA 461
+ G +G LL P+ + PE DQP A
Sbjct: 543 DSG---TLTLGLLLRPEGLTSVLELGPEA-----DQPEA 573
>AL356218-13|CAI13314.1| 699|Homo sapiens nucleolar protein family
6 (RNA-associated) protein.
Length = 699
Score = 31.1 bits (67), Expect = 2.9
Identities = 30/99 (30%), Positives = 41/99 (41%)
Frame = +3
Query: 165 LWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEMPQLPPGK 344
LWP L GGD ++ L L Q L + H+RPP P++ + P P K
Sbjct: 491 LWPELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPP---VPEWDISQDP--PKHK 545
Query: 345 EGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNA 461
+ G +G LL P+ + PE DQP A
Sbjct: 546 DSG---TLTLGLLLRPEGLTSVLELGPEA-----DQPEA 576
>AL356218-12|CAI13315.1| 1146|Homo sapiens nucleolar protein family
6 (RNA-associated) protein.
Length = 1146
Score = 31.1 bits (67), Expect = 2.9
Identities = 30/99 (30%), Positives = 41/99 (41%)
Frame = +3
Query: 165 LWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEMPQLPPGK 344
LWP L GGD ++ L L Q L + H+RPP P++ + P P K
Sbjct: 491 LWPELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPP---VPEWDISQDP--PKHK 545
Query: 345 EGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNA 461
+ G +G LL P+ + PE DQP A
Sbjct: 546 DSG---TLTLGLLLRPEGLTSVLELGPEA-----DQPEA 576
>AL356218-11|CAI13313.1| 1023|Homo sapiens nucleolar protein family
6 (RNA-associated) protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.9
Identities = 30/99 (30%), Positives = 41/99 (41%)
Frame = +3
Query: 165 LWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEMPQLPPGK 344
LWP L GGD ++ L L Q L + H+RPP P++ + P P K
Sbjct: 491 LWPELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPP---VPEWDISQDP--PKHK 545
Query: 345 EGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNA 461
+ G +G LL P+ + PE DQP A
Sbjct: 546 DSG---TLTLGLLLRPEGLTSVLELGPEA-----DQPEA 576
>AK131105-1|BAC85155.1| 638|Homo sapiens FLJ00362 protein protein.
Length = 638
Score = 31.1 bits (67), Expect = 2.9
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +3
Query: 273 HTRPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPK-LYPVRVAASPETPTS--- 440
H P C P + P G EGG R + P L+ + +YP+ + S + P S
Sbjct: 96 HPEAPPCALPSWEPQPHPLWGRGLEGGGERRAMQDPWLEAEPIYPLPIHCS-QFPASLSL 154
Query: 441 ---RYDQPNAFL 467
R QP++FL
Sbjct: 155 CDLRRAQPHSFL 166
>AF361081-1|AAL74405.1| 699|Homo sapiens nucleolar RNA-associated
protein gamma protein.
Length = 699
Score = 31.1 bits (67), Expect = 2.9
Identities = 30/99 (30%), Positives = 41/99 (41%)
Frame = +3
Query: 165 LWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEMPQLPPGK 344
LWP L GGD ++ L L Q L + H+RPP P++ + P P K
Sbjct: 491 LWPELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPP---VPEWDISQDP--PKHK 545
Query: 345 EGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNA 461
+ G +G LL P+ + PE DQP A
Sbjct: 546 DSG---TLTLGLLLRPEGLTSVLELGPEA-----DQPEA 576
>AF361080-1|AAL74404.1| 1007|Homo sapiens nucleolar RNA-associated
protein beta protein.
Length = 1007
Score = 31.1 bits (67), Expect = 2.9
Identities = 30/99 (30%), Positives = 41/99 (41%)
Frame = +3
Query: 165 LWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEMPQLPPGK 344
LWP L GGD ++ L L Q L + H+RPP P++ + P P K
Sbjct: 491 LWPELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPP---VPEWDISQDP--PKHK 545
Query: 345 EGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNA 461
+ G +G LL P+ + PE DQP A
Sbjct: 546 DSG---TLTLGLLLRPEGLTSVLELGPEA-----DQPEA 576
>AF361079-1|AAL74403.1| 1146|Homo sapiens nucleolar RNA-associated
protein alpha protein.
Length = 1146
Score = 31.1 bits (67), Expect = 2.9
Identities = 30/99 (30%), Positives = 41/99 (41%)
Frame = +3
Query: 165 LWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEMPQLPPGK 344
LWP L GGD ++ L L Q L + H+RPP P++ + P P K
Sbjct: 491 LWPELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPP---VPEWDISQDP--PKHK 545
Query: 345 EGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNA 461
+ G +G LL P+ + PE DQP A
Sbjct: 546 DSG---TLTLGLLLRPEGLTSVLELGPEA-----DQPEA 576
>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel beta
subunit protein.
Length = 1251
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 276 TRPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYPVRVAASP 425
T PP R P G P PP G E GP +P+ + VR+ SP
Sbjct: 1181 TDPPAPRTPPEPPGSPPSSPPPASLGSCEGEEEGP-AEPEEHSVRICMSP 1229
>L15297-1|AAA65619.1| 623|Homo sapiens cyclic nucleotide-gated
cation channel protein.
Length = 623
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 276 TRPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYPVRVAASP 425
T PP R P G P PP G E GP +P+ + VR+ SP
Sbjct: 553 TDPPAPRTPPEPPGSPPSSPPPASLGSCEGEEEGP-AEPEEHSVRICMSP 601
>L15296-1|AAA65620.1| 909|Homo sapiens cyclic nucleotide-gated
cation channel protein.
Length = 909
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 276 TRPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYPVRVAASP 425
T PP R P G P PP G E GP +P+ + VR+ SP
Sbjct: 839 TDPPAPRTPPEPPGSPPSSPPPASLGSCEGEEEGP-AEPEEHSVRICMSP 887
>BC078669-1|AAH78669.1| 668|Homo sapiens CD6 molecule protein.
Length = 668
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G+VC
Sbjct: 200 RQLGCGWAVQALPGLHFMPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGVVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor
CNG-channel beta subunit protein.
Length = 1245
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 276 TRPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYPVRVAASP 425
T PP R P G P PP G E GP +P+ + VR+ SP
Sbjct: 1175 TDPPAPRTPPEPPGSPPSSPPPASLGRPEGEEEGP-AEPEEHSVRICMSP 1223
>BC033755-1|AAH33755.1| 639|Homo sapiens CD6 protein protein.
Length = 639
Score = 30.3 bits (65), Expect = 5.1
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 RDVGVSGLAATRTGYSFGSRRGPIISFRLQ---PPSFPGGSCGISPPEYCGHRQSGGLVC 272
R +G G F RGPI ++ ++ G+ YCGH++ G VC
Sbjct: 200 RQLGCGWAVQALPGLHFTPGRGPIHRDQVNCSGAEAYLWDCPGLPGQHYCGHKEDAGAVC 259
Query: 271 CMH-AW 257
H +W
Sbjct: 260 SEHQSW 265
>AB052622-1|BAB86306.1| 1250|Homo sapiens hDDM36 protein.
Length = 1250
Score = 30.3 bits (65), Expect = 5.1
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 276 YAACMLGRTLILDQTVLVCQLGLRFPHRHPHEVSSATDNLFCRW*DNDPSCLYVCPFTLK 97
YAA G+T + Q G P H H S+++ +++ RW D + + + +T++
Sbjct: 727 YAAVWKGKTEKAPAPDMPIQRGPPLPPAHVHAESNSSTSIWLRWKKPDFTTVKIVNYTVR 786
Query: 96 F 94
F
Sbjct: 787 F 787
>AB046848-1|BAB13454.1| 980|Homo sapiens KIAA1628 protein protein.
Length = 980
Score = 30.3 bits (65), Expect = 5.1
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 276 YAACMLGRTLILDQTVLVCQLGLRFPHRHPHEVSSATDNLFCRW*DNDPSCLYVCPFTLK 97
YAA G+T + Q G P H H S+++ +++ RW D + + + +T++
Sbjct: 457 YAAVWKGKTEKAPAPDMPIQRGPPLPPAHVHAESNSSTSIWLRWKKPDFTTVKIVNYTVR 516
Query: 96 F 94
F
Sbjct: 517 F 517
>U93205-1|AAC25675.1| 241|Homo sapiens nuclear chloride ion channel
protein protein.
Length = 241
Score = 29.9 bits (64), Expect = 6.7
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +3
Query: 297 CPQYSGGEMPQLPPGKEGGWSRNEI---MGPLLDPKLYPVRVAASPETPTSRYDQPNAFL 467
CP GGE+P L G E N+I + +L P YP A +PE+ T+ D F
Sbjct: 59 CP---GGELPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFS 115
Query: 468 DKLQSKYPMLYSILQNEASPELK 536
+++ P L L+ LK
Sbjct: 116 AYIKNSNPALNDNLEKGLLKALK 138
>BC067080-1|AAH67080.1| 312|Homo sapiens FCRLB protein protein.
Length = 312
Score = 29.9 bits (64), Expect = 6.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 375 PLSHSDSSRPPSQAAVAASPLQSTAGIGSRAASYAACMLGRTL 247
P H+ SS PP A SP G GSR+ A + R L
Sbjct: 150 PRGHTASSPPPLVCGSARSPRGKQEGAGSRSGGQAGAVAPRPL 192
>AK055614-1|BAB70971.1| 312|Homo sapiens protein ( Homo sapiens
cDNA FLJ31052 fis, clone HSYRA2000629, weakly similar to
SKIN SECRETORY PROTEIN XP2 PRECURSOR. ).
Length = 312
Score = 29.9 bits (64), Expect = 6.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 375 PLSHSDSSRPPSQAAVAASPLQSTAGIGSRAASYAACMLGRTL 247
P H+ SS PP A SP G GSR+ A + R L
Sbjct: 150 PRGHTASSPPPLVCGSARSPRGKQEGAGSRSGGQAGAVAPRPL 192
>AF338650-1|AAK07661.1| 2641|Homo sapiens PDZ domain-containing
protein AIPC protein.
Length = 2641
Score = 29.9 bits (64), Expect = 6.7
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 327 QLPPGKEGGWSRNEIMGPLLDPKL-YPVRVAASPETPTSRYDQPNAFLDKLQSKY 488
+ P G G W + E+ G PKL Y VR T T P + L S++
Sbjct: 867 EAPKGSPGSWWKKELSGSSSAPKLEYTVRTDTQSPTNTGSPSSPQQKSEGLGSRH 921
>AF109197-1|AAD26137.1| 241|Homo sapiens nuclear chloride channel
protein.
Length = 241
Score = 29.9 bits (64), Expect = 6.7
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +3
Query: 297 CPQYSGGEMPQLPPGKEGGWSRNEI---MGPLLDPKLYPVRVAASPETPTSRYDQPNAFL 467
CP GGE+P L G E N+I + +L P YP A +PE+ T+ D F
Sbjct: 59 CP---GGELPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFS 115
Query: 468 DKLQSKYPMLYSILQNEASPELK 536
+++ P L L+ LK
Sbjct: 116 AYIKNSNPALNDNLEKGLLKALK 138
>AB002298-1|BAA20760.2| 2847|Homo sapiens KIAA0300 protein.
Length = 2847
Score = 29.9 bits (64), Expect = 6.7
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 327 QLPPGKEGGWSRNEIMGPLLDPKL-YPVRVAASPETPTSRYDQPNAFLDKLQSKY 488
+ P G G W + E+ G PKL Y VR T T P + L S++
Sbjct: 1072 EAPKGSPGSWWKKELSGSSSAPKLEYTVRTDTQSPTNTGSPSSPQQKSEGLGSRH 1126
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,480,294
Number of Sequences: 237096
Number of extensions: 2374487
Number of successful extensions: 7475
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 6630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7462
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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