Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b06
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-10|CAA94328.1|  276|Caenorhabditis elegans Hypothetical p...    29   1.8  
AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode asta...    29   2.4  
Z81134-5|CAB54316.1|  101|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z32681-7|CAA83603.1|  108|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    27   9.5  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    27   9.5  
AB009658-1|BAA82662.1|  108|Caenorhabditis elegans Ceinsulin-2 p...    27   9.5  

>Z70307-10|CAA94328.1|  276|Caenorhabditis elegans Hypothetical
           protein C39E9.9 protein.
          Length = 276

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 171 PNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEM-PQLPPGKE 347
           P  P   GD   +G A  P   G +   +   + + RPP  RCP    G   P   PG++
Sbjct: 91  PGEPGAPGDDGWNGDAGQP---GPDFPLFDQSLIYQRPPCIRCPVGEPGPPGPDGEPGEQ 147

Query: 348 G 350
           G
Sbjct: 148 G 148


>AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode astacin
           protease protein27 protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 141 LTTYRKDYLWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHT 278
           +T +   Y++P++    G+G  S +   P L  Q L+  ++C  HT
Sbjct: 100 VTFHENRYVYPHVSIFEGNGCWSFVGKQPSLREQSLSLERSCTDHT 145


>Z81134-5|CAB54316.1|  101|Caenorhabditis elegans Hypothetical
           protein T28D6.9 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 275 MLHACLVER*FLTRQFWCVS*A*GFPIATHMR*VRPQIIFSVGGEI 138
           ++ AC +   ++   FW  S A   PI  H R +R  +I S+ G I
Sbjct: 20  LIGACFLPLVWIVNTFWFFSDAFCKPINAHRRQIRKYVIASIVGSI 65


>Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical
           protein B0334.6 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 133 SILFVCLSVYTKILNCSFSILDYKIISKVY 44
           +IL+VCLS     LN S +   Y ++SK Y
Sbjct: 315 AILYVCLSQQLVFLNASLNFCLYCVVSKRY 344


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 117 HTNKMDHYLTTYRKDYLWPNLPHVGGDGETSGLADTPKLSGQELAFYQ 260
           H NK  HY  T   + LW  +P    D  T G   +P +   +L +++
Sbjct: 5   HLNKNQHYCPTVNVERLWSLVPQEVRDKATGG--KSPVIDCTKLGYFK 50


>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 117 HTNKMDHYLTTYRKDYLWPNLPHVGGDGETSGLADTPKLSGQELAFYQ 260
           H NK  HY  T   + LW  +P    D  T G   +P +   +L +++
Sbjct: 62  HLNKNQHYCPTVNVERLWSLVPQEVRDKATGG--KSPVIDCTKLGYFK 107


>AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical
           protein C35A11.3 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 357 SSRPPSQAAVAASPLQSTAGIGSRAASYAACMLGRTLILDQTVLVCQ 217
           S+ P ++    ASP  ST G  +     AA    +T +L++  +VCQ
Sbjct: 66  SNSPSTETTTCASPTTSTNGHLTSTTDGAATSPIKTEVLNKYYIVCQ 112


>Z32681-7|CAA83603.1|  108|Caenorhabditis elegans Hypothetical
           protein F56F3.6 protein.
          Length = 108

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -3

Query: 421 LAATRTGYSFGSRRGPIISFRLQPPSFPGGSCGISPPEYCGHRQSGGLVCCM 266
           L A    +   SR  PI    ++PP    GS  + PP       +  L+C M
Sbjct: 13  LMAAVAAFGLFSRPAPITRDTIRPPRAKHGSLKLCPPGGASFLDAFNLICPM 64


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
 Frame = +3

Query: 282 PPDCRCPQYSGGEMPQ--LPPGKEGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQ 452
           PP    P       PQ   PP     + +  +  P   P  YP     +P  P + Y Q
Sbjct: 31  PPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQ 89


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
 Frame = -3

Query: 424 GLAATRTGYSFGSRRGPIISFRLQPP--SFPGGSCGISPPEYCGHRQSGGLV-CCMHAW* 254
           G+    T  +FGS+  P   F   P    F G +   +  +    +Q  G      H + 
Sbjct: 56  GIDPITTSKTFGSQTTPKTEFGGAPSLSGFGGNAAAAAANKTSFDQQGNGFGGAAKHGFG 115

Query: 253 NANS*PDSFGVSARPEVSPSP 191
                P SFG +  P   PSP
Sbjct: 116 GVGGAPSSFGANVIPVNKPSP 136


>AB009658-1|BAA82662.1|  108|Caenorhabditis elegans Ceinsulin-2
           protein.
          Length = 108

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -3

Query: 421 LAATRTGYSFGSRRGPIISFRLQPPSFPGGSCGISPPEYCGHRQSGGLVCCM 266
           L A    +   SR  PI    ++PP    GS  + PP       +  L+C M
Sbjct: 13  LMAAVAAFGLFSRPAPITRDTIRPPRAKHGSLKLCPPGGASFLDAFNLICPM 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,979,918
Number of Sequences: 27780
Number of extensions: 353052
Number of successful extensions: 1208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)