Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b05
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    32   0.090
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    30   0.27 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    29   0.63 
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.1  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    28   1.5  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    28   1.5  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   2.6  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   2.6  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.6  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   4.5  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   5.9  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   5.9  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   7.8  

>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 9/181 (4%)
 Frame = +3

Query: 63  DDSNTLDQEDEFEKYLEILKSYLNELQDQKLLEIC--SAWVVRLSACRDD---EKSLRNR 227
           DDS+  D+ +  +KY    K  +     + LLE+   +A + R +A + +   +K +  R
Sbjct: 183 DDSDLADESELSKKYTSDRK--IRNASKKALLELHRNTARLTRETALKPEVVVKKKVTLR 240

Query: 228 YIFSLCYQLSKGVLDDPFTQSPSANINLPPLVDSLQSENSSEVEYAVINPYEPNSLANED 407
             F      +   L++       AN   PP V+  + + S +    ++N  +   L+ ED
Sbjct: 241 EFFQKIGFKNDNQLENKAISEEEANSTEPPNVEKEEPKPSVDRSTGIVNSEDIKELSVED 300

Query: 408 D---LDNLQNHKLNLKTSKTFETTTRPSRSINDFNRKILHCNCPAQ-SEDNRCSSAEYQF 575
           D   L  +    L++  +  F TT   ++   + N+K L     A+ +ED+  S  E + 
Sbjct: 301 DSLELKEITPEALDIGQTSLF-TTLNQTQVKKEDNKKFLLKEINAKLNEDDIDSELEIEV 359

Query: 576 R 578
           +
Sbjct: 360 K 360


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 561  AEYQFRTASLIRKLRDIKAQNSLLHNELESLRHDTLRSQNN 683
            + Y  +T  L  K++ ++ + S+L +ELES R +    QNN
Sbjct: 952  SSYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNYQNN 992


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +3

Query: 276 PFTQSPSANINLPPLVDSLQSENSSEVEYAVINPYEPNSLANEDDLDNLQNHKLNLKTSK 455
           P  Q+ S+N+  PP+        S  V   + N   P S AN D +  LQ  K  +  +K
Sbjct: 377 PTVQTTSSNV--PPVNRPSLKSKSPSVSNILSNQLSPISSANNDVMARLQ-PKSPIPATK 433

Query: 456 TFETTTRPSRS 488
           ++  T +  RS
Sbjct: 434 SYSATIQTPRS 444


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 552 CSSAEYQFRTASLIRKLRDIKAQNSLLHNELESLRHDTLRSQNNCE 689
           CS+    + T SLI     I  Q SLL +++ SL  ++  SQ + +
Sbjct: 101 CSTKVSTYTTPSLIEVCNRISNQKSLLSSDVFSLNSESTNSQRDVD 146


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 36  LLVRKFIKMDDSNTLDQEDEFEKYLEILKSYLNELQDQKLLEI 164
           +L  KF+++++ N     +   KY+E++K Y N+  + K L++
Sbjct: 95  ILASKFLELEEQNKC--LNTVNKYMEVVKKYGNKADEFKALKL 135


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 327 SLQSENSSEVEYAVINPYEPNSLANEDDLDNLQNHKLNLKTS-KTF-ETTTRPSRSIND 497
           SL  ENS +    ++ PY   +L  ED++  + +   +     KT  ET   P ++IN+
Sbjct: 585 SLNLENSFDFGMPLMGPYTQQNLQLEDEISEISSPSYSSDDDRKTISETQPAPKQNINE 643


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 282 TQSPSANINLPPLVDSLQSENSSEVEYAVINPYEPNSLAN 401
           TQ P+ N+  PP V         +   ++ +P  P ++AN
Sbjct: 573 TQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPGAMAN 612


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 357 EYAVINPYEPNSLANEDDLDN----LQNHKLNL--KTSKTFETTTRPSRSINDFNRKILH 518
           E  +  P++PNS+    D+DN    L +H+L +  +  + + T ++ S       R +LH
Sbjct: 673 ERVMTAPHQPNSITGNKDVDNVLVQLPDHQLIILFQRIRDWNTNSKTSMVAQRLLRLLLH 732

Query: 519 CNCP 530
              P
Sbjct: 733 SYSP 736


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 381 EPNSLANEDDLDNLQNHKLNLKTSKTFETTTRPSRS-INDFNRKILHCNCPAQSEDNRCS 557
           +P +L   ++  N +N K  +K  K  E +  P++  I+ +N K+L C+         CS
Sbjct: 752 DPVALRARNEESNEENKKPVIKNGKA-EISAEPTKEEIDIYNEKVLACSIKNPEACEMCS 810

Query: 558 S 560
           +
Sbjct: 811 A 811


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 489 YSLKVS-LLSQKFCLSLNLIYDFANYQGRLHWPGS 388
           Y LK++  LS   C SLN I     YQ +L +PGS
Sbjct: 129 YWLKLTNQLSGLLCASLNYIDSSNTYQPQLSYPGS 163


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 99  EKYLEILKSYLNELQDQKLLEICSAWVVRLSACRDDEKSLRNRYIFSLCYQLSKGVLD 272
           E+ L+ + SYL +L    LLE   +W    +   DD  S  +  + S+ Y  S+  L+
Sbjct: 16  EEKLKTMWSYLFKLFGITLLERTESWYTVKTHLSDDSSSSSSHRLSSVSYAKSRTRLE 73


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 306 NLPPLV-DSLQSENSSEVEYAVINPYEPNSLANEDDLDNLQNHKLNLKTSKTFETTTRPS 482
           N+PP+   S  SE      Y ++ P++P   +   D+ N  N  L+    KT    T  +
Sbjct: 84  NIPPIPRKSKLSETGKRPAY-LLKPFQPPFHSANSDVSNNSNGALSSNMLKTHAHHTNST 142

Query: 483 RS 488
           +S
Sbjct: 143 KS 144


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 213 IFHRLYMLKVLQPMHYRFQEAFDLEARSNNFLKFPNTFRIH 91
           I+H      V+Q  +YR ++ +D    +N FL   N   +H
Sbjct: 162 IWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVLH 202


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 174 WVVRLSACRDDEKSLRNRYIFSLCYQLSKGVLDDPFTQSPSANINLPPLVDS-LQSENSS 350
           W++R      +   + N ++ S  +Q ++  L  P  ++    +NL  L+   L  ++  
Sbjct: 366 WMIRSWNVDFEPSIIYNCFLRSGLFQ-NQQPLTGPSPETIRIAVNLQELIGKYLGDKDIF 424

Query: 351 EVEYAVINPYEPNSLANEDDLDN 419
           ++E   INP E NS    DD+ N
Sbjct: 425 QIEN-FINPIEENSADTNDDIVN 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,569
Number of Sequences: 5004
Number of extensions: 54440
Number of successful extensions: 218
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)