Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b05
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ... 31 0.95
At1g77920.1 68414.m09080 bZIP family transcription factor contai... 30 1.7
At1g75250.1 68414.m08742 myb family transcription factor contain... 30 1.7
At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR... 29 2.2
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 29 2.2
At3g29830.1 68416.m03796 F-box family protein contains Pfam:PF00... 29 2.9
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 29 3.8
At5g45050.2 68418.m05524 disease resistance protein-related simi... 28 5.1
At5g45050.1 68418.m05523 disease resistance protein-related simi... 28 5.1
At2g27440.1 68415.m03316 rac GTPase activating protein, putative... 28 5.1
At1g66250.1 68414.m07521 glycosyl hydrolase family 17 protein si... 28 5.1
At4g24100.1 68417.m03460 protein kinase family protein contains ... 28 6.7
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 27 8.9
>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 641
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 655 LKDSNSLCNKLFCAFISRSFLIRL 584
LKD + CN LF F +RSFL R+
Sbjct: 26 LKDPRTCCNNLFSIFSARSFLYRV 49
>At1g77920.1 68414.m09080 bZIP family transcription factor contains
Pfam profile: PF00170 bZIP transcription factor
Length = 368
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +3
Query: 414 DNLQNHKLNLKTSKTFETTTRPSRSINDFNRKILHCNCPAQSEDNRCSSAEYQFRTASLI 593
D+ N K+N +S +PS + N + +H + NR ++ + + R + +
Sbjct: 57 DHNNNIKINYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRRLAQNREAARKSRLRKKAYV 116
Query: 594 RKLRDIKAQNSLLHNELESLR 656
++L + + + S L ELE ++
Sbjct: 117 QQLEESRLKLSQLEQELEKVK 137
>At1g75250.1 68414.m08742 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 126
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 405 DDLDNLQNHKLNLKTSKTFETTTRPSRSINDFNRKIL 515
+DL N++ ++ L KTFE+ SRSINDF+ + +
Sbjct: 59 EDLINIETGRVPLPNYKTFESN---SRSINDFDTRYI 92
>At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 177 PMHYRFQEAFDLEAR-SNNFLKFPNTFRIHLP 85
PMHY+F FDL + N+FL T+ H+P
Sbjct: 866 PMHYKFNNFFDLSQQVVNDFLLKTLTYVKHIP 897
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
(DNA polymerase II subunit A) {Homo sapiens}; contains
Pfam profiles: PF03175 DNA polymerase type B, organellar
and viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 201 DDEKSLRNRYIFSLCYQLSKGVLDDPFTQSPSANINL---PPLVDSLQSENSSEVEYAVI 371
D + L+ R + C + K VLD P T+ A I + P VD+++S EY +
Sbjct: 685 DQQSKLKER-LKKYCQKAYKRVLDKPITEVREAGICMRENPFYVDTVRSFRDRRYEYKTL 743
Query: 372 N 374
N
Sbjct: 744 N 744
>At3g29830.1 68416.m03796 F-box family protein contains Pfam:PF00646
F-box domain
Length = 464
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 111 EILKSYLNELQDQKLLEICSAWVVRLSACRDDEKSLRN 224
+IL LN+L+ + L +CS + +S C D LR+
Sbjct: 288 DILSHLLNDLRSSRTLTVCSYLLEVISECNDPVDMLRD 325
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 28.7 bits (61), Expect = 3.8
Identities = 45/216 (20%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Frame = +3
Query: 87 EDEFEKYLEILKSYLNELQDQKLLEI---CSAWVVRLSACRDDEKSLRNRYIFSLCYQLS 257
+++++ L+ L+ ELQ Q E+ S W ++ + + +EK LR R + +S
Sbjct: 331 KNDWDLLLKRLEKEKTELQVQLETELDRRSSEWTSKVESFKVEEKRLRERVRELAEHNVS 390
Query: 258 KGVLDDPFTQSPSANINLPPLVDSLQSENSSEVE---------YAVINPYEPNSLANEDD 410
F + + I++ +D +E S+ E ++ + + + DD
Sbjct: 391 LQREISTFHEKETERIDMIRHLDETVTELSATAEEMREENLFLMQNLSKLQESYTGSTDD 450
Query: 411 LDNLQNH--KLNLKTSKTFETTTRPSRSINDFNRKILHCNCPAQSEDNRCSSAEYQFRTA 584
LD ++ + + +++ + ++ TR R+ + K + SE+ + +E+ +
Sbjct: 451 LDYVRRNFEEKDMECKELHKSVTRLLRTCKE-QEKTIQGLRDGFSEEIKKQPSEHVDKKL 509
Query: 585 SLIRKLRDIKAQNSLLHNELES--LRHDTLRSQNNC 686
+ +LR + + S L E+ES L ++LR +NNC
Sbjct: 510 QM-EQLRLVGVELS-LRKEVESMKLEAESLRRENNC 543
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 180 VRLSACRDDEKSLRNRYIFSLCYQLSKGVLDDPFTQSPSANI 305
V L + R D K L Y FS C+ LS V++D F AN+
Sbjct: 771 VSLKSIRLDFKKLPVHYTFSNCFDLSPQVVND-FLVQAMANV 811
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 180 VRLSACRDDEKSLRNRYIFSLCYQLSKGVLDDPFTQSPSANI 305
V L + R D K L Y FS C+ LS V++D F AN+
Sbjct: 799 VSLKSIRLDFKKLPVHYTFSNCFDLSPQVVND-FLVQAMANV 839
>At2g27440.1 68415.m03316 rac GTPase activating protein, putative
similar to rac GTPase activating protein 3 [Lotus
japonicus] GI:3695063; contains Pfam profiles PF00620:
RhoGAP domain, PF00786: P21-Rho-binding domain
Length = 368
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 324 DSLQSENSSEVEYAVINPYEPNSLANEDDLDNLQNHKLNLKTSKTFETTTRPSRSINDFN 503
D E + EVE V+ E + DDLDN ++ ++ L + +PS ++N +
Sbjct: 308 DGNVEEYNQEVEIYVLEEVEEEEGEDVDDLDNEESERITLLADE-----HKPSSAVNAND 362
Query: 504 RK 509
RK
Sbjct: 363 RK 364
>At1g66250.1 68414.m07521 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]
Length = 505
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 303 INLPPLVDSLQSENSSEVEYAVINPYEPNSLA 398
+N+ P +D +QS ++YA+ P PN A
Sbjct: 203 VNVYPYIDYMQSNGVIPLDYALFKPIPPNKEA 234
>At4g24100.1 68417.m03460 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 709
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 483 RSINDFNRKILHCNCPAQSEDNRCSSAEYQFRTASLIRKLRDIKAQNSLL--HNELESLR 656
+S+ D + + L A +++ S +EYQ ++ +RD+K Q SLL ++LE +
Sbjct: 319 KSLQDKDAQQLALKRMATADEEAISQSEYQRGVSAWNFDVRDLKTQASLLIDDDDLEESK 378
Query: 657 HD 662
D
Sbjct: 379 ED 380
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 27.5 bits (58), Expect = 8.9
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Frame = +3
Query: 333 QSENSSEVEYAVINPYEPNSLANEDDLDNLQNHKLNLKTSKTF-ETTTRPSRSINDF--- 500
+SE+ E E + E S+ANE DN+ + + ++ SK E + I +
Sbjct: 680 ESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIEELSVA 739
Query: 501 NRKILHCNCPAQSEDNRCSSAEYQFRTASLIRKLRDIKAQNSLLHNELESLRH 659
N ++ Q D + E + R AS ++K+ ++ +N L + + ++++
Sbjct: 740 NESLVDKETKLQHIDQ--EAEELRGREASHLKKIEELSKENENLVDNVANMQN 790
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,471
Number of Sequences: 28952
Number of extensions: 255631
Number of successful extensions: 901
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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