Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b03
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   5.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.8  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   9.8  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 439 RSTSSPTIGERSLRRWTFKWLPEQQRGIN 353
           + T++P  G++ LR+W  +   E+Q  +N
Sbjct: 159 KQTNAPKKGKKQLRKWDDQITEEEQAALN 187


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 440  KKTWMESVNDDMREREKAHTKAPRVMRRRTSEVQDNQFYTQAPVV 574
            +K  +E   DDMRER+++  +   V+++   ++Q NQ   +A +V
Sbjct: 1451 QKNMLEQSLDDMRERQRSTNRNLDVLKK---QIQ-NQLLQEADIV 1491


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 284 GGAAYYKNET*KSSLKSGYDI*VVD 358
           GGA Y  + T    L+ GYD+ +VD
Sbjct: 13  GGAGYIGSHTCVVLLEKGYDVVIVD 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,921
Number of Sequences: 5004
Number of extensions: 49591
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)