Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b03
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123...    30   1.4  
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072...    30   1.9  
12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569     29   2.5  
10_08_0486 - 18239351-18239592,18240893-18240984,18241279-182413...    28   5.8  
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290...    28   7.7  
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    28   7.7  

>05_01_0177 +
           1231679-1231753,1232259-1232546,1232608-1232685,
           1233458-1233673,1233862-1233981,1234079-1234804
          Length = 500

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/86 (23%), Positives = 36/86 (41%)
 Frame = +2

Query: 389 SPSAERSFTNCRGRGRPKKTWMESVNDDMREREKAHTKAPRVMRRRTSEVQDNQFYTQAP 568
           +PSA+ S    + +    K  +  V+DD +      ++ PR     TS V+D++    +P
Sbjct: 354 TPSAKVSPIFAKKKSATPKNGLSQVDDDAKSVFSVQSERPRRHSIATSTVRDDESLASSP 413

Query: 569 VVNRFYLI*SSNSTSAKTNGSVSVNG 646
            V  +     S     +  GS   +G
Sbjct: 414 SVPSYMAPTKSARAKLRLQGSAVTDG 439


>10_08_1027 -
           22404169-22404807,22406148-22406360,22407062-22407255,
           22407422-22407566,22407801-22407875,22408222-22408380,
           22408466-22408645,22408756-22409243,22409375-22409738,
           22409811-22409943,22410023-22410153,22410247-22410354,
           22410451-22410897,22411425-22411514,22411607-22411915,
           22412209-22412320,22412488-22412699
          Length = 1332

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 586 IKSINNWRLCIKLIILNF*SSPSHHSRGLRVSFLSLSHIVIHRLHPCLLRSTS 428
           + S+N     +K +      SPS  S   R   +     +I +LHPCL RS S
Sbjct: 103 LTSVNQMVALLKKLTFGAMLSPSEASEEFRQGIIRCFRAMILQLHPCLDRSCS 155


>12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569
          Length = 411

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 476 REREKAHTKAPRVMRRRTSEVQDNQFYTQAPVVNRF 583
           RE  +A T  PR+  R   E Q +QFYT +   ++F
Sbjct: 122 REGYRAETTEPRMYSRSLIEKQASQFYTTSMFADKF 157


>10_08_0486 -
           18239351-18239592,18240893-18240984,18241279-18241364,
           18241442-18241643,18241743-18241960,18242524-18242640
          Length = 318

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +2

Query: 155 HHRQIFCASYHGLSKF**YYYRWAALNHHTD---FGGEAVMR--SGFKGGAAYYKNET*K 319
           HH ++    Y  L+     YY W+A    T    +GGE V++    +  G   Y N+   
Sbjct: 50  HHAEMDSVEYFNLADLWEQYYEWSAYGAGTTVQLYGGERVVQYYVPYLSGIQLYTNKAQT 109

Query: 320 SSLKSGYD 343
           +S   G D
Sbjct: 110 ASRSFGED 117


>03_01_0373 -
           2904914-2904949,2905030-2905144,2906446-2906534,
           2906670-2906889,2907921-2907985,2908619-2908879,
           2909204-2909417,2910643-2910698,2910891-2910947,
           2911043-2911115,2912711-2913225
          Length = 566

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 422 RGRGRPKKTWMESVNDDMREREKAHTKAPRVMRRRTSEVQDNQFYTQ 562
           R R R K+   E   +  RE+++      R  RRR  E +D + Y +
Sbjct: 117 RSRDREKEKEKEKEREREREKDRERRSRSRSERRRDDEERDRERYRE 163


>03_01_0005 +
           46370-46454,46962-47071,47381-47545,47672-48463,
           48730-48840,48935-49195,49415-49638,49735-49855,
           50673-51214,51302-51488,51569-51895,52047-52197,
           52287-52424,52918-53013,53276-53357,54411-54679,
           54769-54882,55050-55288,55488-55715,55799-55951,
           56479-56616,57061-57188,57598-57718,58142-58306,
           59486-59633,59772-59898,60025-60118,60119-60268,
           60577-60624,60712-60819,61040-61114,61225-61275,
           61341-61487,61584-61714,61944-62031,62204-62266,
           62336-62582,62830-62981,63056-63126,63214-63370,
           63520-63687
          Length = 2323

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +2

Query: 254 GEAVMRSGFKGGAAYYKNET*KSSLKSGYDI*VVDAXXXXXXXXKSPSAERSFTNCRGRG 433
           GE  MRSG   G          + L +  +I  V               +RSF   +G+G
Sbjct: 158 GEVPMRSGESAGPVSISKVEANALLAAASEISTVTKEANLADDSNVSCKKRSFGKGKGKG 217

Query: 434 RPKKTWMESVNDDMREREKA-HT 499
           + KKT  +     +R R    HT
Sbjct: 218 KFKKTMAKREASKLRNRNTTEHT 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,129,739
Number of Sequences: 37544
Number of extensions: 309382
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)