Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b03
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)                 28   5.9  
SB_31542| Best HMM Match : FeS (HMM E-Value=1.6)                       28   7.9  
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)                     28   7.9  

>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 422 RGRGRPKKTWMESVNDDMREREKAHTKAPRVMRRR 526
           R RGRP+ TW   ++ D ++  K   +  R+ + R
Sbjct: 439 RKRGRPRNTWRRDLDADAKQMGKTWGQLERLAQNR 473


>SB_31542| Best HMM Match : FeS (HMM E-Value=1.6)
          Length = 553

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 434 RPKKTWMESVNDDMREREKAHTKAPRVMRRRTSEVQDNQFYTQAP 568
           R  K   E   D + + +KAH ++P+V ++ + ++ D+ +    P
Sbjct: 89  RQLKAGSEKAFDPVNKDKKAHKQSPKVSKKSSKQLHDSYYDPSDP 133


>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
          Length = 148

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 422 RGRGRPKKTWMESVNDDMREREKAHTKAPRVMR 520
           R RGRP+ TW   ++ D +   K   +  R++R
Sbjct: 112 RKRGRPRNTWRRDLDADAKHMGKTWGQLERLVR 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,983,705
Number of Sequences: 59808
Number of extensions: 357698
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)