Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b01
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        27   1.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   2.7  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   4.8  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    25   6.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    25   6.3  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   8.4  
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.4  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   8.4  

>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 10  LKFTKTHQHVTKFNQTFFYFIFLLYLSCC*YRN 108
           +KF K  ++V + NQ   +F+F+ +LS C  RN
Sbjct: 145 IKFNKLAKYVYEGNQ---FFLFIFFLSICQIRN 174


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = -3

Query: 419  WTTARSAEPSSAASDT-----AVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHATGT 255
            W+++   +PS+AAS T     ++ TA V    +S+VA   SA  +   +I+ + V  + T
Sbjct: 956  WSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVAT-ASATDSSTSSIAAASVTGSST 1014

Query: 254  NLTA 243
            +  A
Sbjct: 1015 SSVA 1018


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 333 HGSRAYLRTANTSLNNKHLSRARNRDQLDRSNPFYRPGDRT 211
           HG R   R+A   L ++H+ + R    LD      RP D T
Sbjct: 154 HGER---RSAMDGLRDRHIRKVRVSQLLDLQRRRIRPADHT 191


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 441 VTLFMRTMDHSKKRRALQCSLRYSRAHSCSTSRLLLHGSRAYLRTANTSLNNKHLSR 271
           + L +  +   KK R +Q   R  +A +  T   +L+      +  NT+ N  H+SR
Sbjct: 132 LNLMVGPLSFRKKERNIQRRERLQKAPNVLTQPTMLNERNITTQENNTTKNVLHISR 188


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 240  CCGQVGPCCVHARGAYCSNSCW 305
            CC Q G   V+  G+  +  CW
Sbjct: 1164 CCYQFGAVFVNGEGSMVNKECW 1185


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +3

Query: 159 DMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 290
           D P  + C  C+ P  G C       D C  V   C H   A+C
Sbjct: 17  DTPKDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHC 60


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 198 PMSGPCGPLAYRMDCCGQVGPCCVHARGAY 287
           P  G CG + Y    C  VG  C+++   Y
Sbjct: 28  PRYGTCGGIYYDGPTCCVVGSSCIYSNPWY 57


>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 404 SAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPP 303
           S  P+SA + T V +A   + YS+++ V    PP
Sbjct: 89  SVSPTSATTTTPVASATDVSVYSASIHVPTGNPP 122


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 267 VHARGAYCSNSCWRCGDMHGYRGG 338
           +  +  YC N C R  D+  + GG
Sbjct: 421 IETKSGYCENCCERYKDLERHLGG 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,608
Number of Sequences: 5004
Number of extensions: 38962
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)