Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b01
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 34   0.075
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)            30   0.92 
SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_57201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_14101| Best HMM Match : CHB_HEX_C (HMM E-Value=7.9)                 29   2.8  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               27   6.5  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   27   6.5  
SB_38675| Best HMM Match : HEAT (HMM E-Value=0.0016)                   27   8.6  
SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)             27   8.6  
SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   27   8.6  

>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 171 RNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAY--CSNSCWRCG 314
           RN C     P +G CG  A      G  G CC H  GAY  CS+ C   G
Sbjct: 143 RNACRNGGTPHAGRCGCRA------GFTGTCCEHVGGAYSDCSHQCGNSG 186


>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 130 NQFEVNRRNWTCLYVIAVWVVRGLCLARAVPWP-IEWIAAVKLVPVACTREVLIVQTRVG 306
           +Q+ +    W  +  +       +   RA+PWP I+ I A+   P+ C+R  +   T+  
Sbjct: 101 HQYSIRALPWPPIQSVRALPWPPIQSVRALPWPPIQSIRALPWPPIQCSRATMATNTKCS 160

Query: 307 GAEICTAT 330
            A + T T
Sbjct: 161 RATMATNT 168


>SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)
          Length = 346

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 211 RAVPWP-IEWIAAVKLVPVACTREVLIVQTRVGGAEICTAT 330
           RA+PWP I+ I A+   P+ C+R  +  + +   A + T T
Sbjct: 269 RALPWPPIQSIRALPWPPIQCSRVTMATKAKCSRATMATNT 309


>SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 180 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAY 287
           CLG  G    PCG    +  C    G C +   G Y
Sbjct: 435 CLGLPGDEQSPCGNALLQKTCTDAGGKCAITVDGYY 470


>SB_57201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 211 RAVPWP-IEWIAAVKLVPVACTREVLIVQTRVGGAEICTAT 330
           RA+PWP I++  A  +    C+R  +   T+   A + T T
Sbjct: 117 RALPWPPIQYSRATMVTNTKCSRATMATNTKYSRATMATYT 157


>SB_14101| Best HMM Match : CHB_HEX_C (HMM E-Value=7.9)
          Length = 321

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 211 RAVPWP-IEWIAAVKLVPVACTREVLIVQTRVGGAEICTAT 330
           RA+PWP I++  A  +    C+R  +   T+   A + T T
Sbjct: 117 RALPWPPIQYSRATMVTNTKCSRATMATNTKYSRATMATYT 157


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = -3

Query: 416 TTARSAEPSSAA-SDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHATGTNLTAA 240
           TT++S   + A  S T   T  +    +       ++      T+STS   AT T  T+ 
Sbjct: 440 TTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTSTTKATTTPSTST 499

Query: 239 IHSIGQGTARARHRPLTTQTA 177
             +       A   P  T+TA
Sbjct: 500 TKATTSTAVEATTSPAATETA 520


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +3

Query: 183  LGCQGPMSGPCGPLAYRMDCCGQ-VGPCCVHARGAYC 290
            +G  GP   PC    YR D  G+ V  C     G YC
Sbjct: 951  IGSYGPRQIPCPKATYRPDAGGRNVSDCSPCTVGNYC 987


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 291  NNKHLSRARNRDQLDRSNPFYRPGDRTGQT*APDNPNS 178
            N K +    + DQL   +PFYR G R  +T  P N +S
Sbjct: 958  NLKDIKCTDSLDQLKVCDPFYRAGSRPART--PSNASS 993


>SB_38675| Best HMM Match : HEAT (HMM E-Value=0.0016)
          Length = 606

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 383 ASDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHAT 261
           A+DTA+PTA++     +TV V IS     + T++T  ++++
Sbjct: 370 ATDTAIPTAMITVIPKATVTV-ISEATVTMSTVTTPAINSS 409


>SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
          Length = 367

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 210 PCGPLAYRMDCCGQVGPCCVHARGAYCSN 296
           PC P  +R+D  G   PC   + G YCSN
Sbjct: 61  PCLPGYFRLDRFGMCKPC---SYGYYCSN 86


>SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 22  KTHQHVTKFNQTFFYFIF 75
           K  QH+TK  Q+ FYFIF
Sbjct: 784 KFEQHITKTCQSAFYFIF 801


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -2

Query: 333 HGSRAYLRTANTSLNNKHLSRARNRD---QLDRSNPFYRPGDRTGQT*APDNPNSNYV 169
           H   A+ R+ +T  N  + S+  N     QL   +PF  P D+T Q      P   YV
Sbjct: 563 HSKAAHQRSRSTGNNRDNKSKENNIKKPVQLPWEDPFANPVDKTRQVKPVRRPRIAYV 620


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,813
Number of Sequences: 59808
Number of extensions: 317729
Number of successful extensions: 931
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)