Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b01
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55400.1 68416.m06153 methionyl-tRNA synthetase / methionine-...    30   0.75 
At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1) i...    29   1.7  
At4g30070.1 68417.m04277 plant defensin-fusion protein, putative...    29   2.3  
At2g14580.1 68415.m01633 pathogenesis-related protein, putative ...    29   2.3  
At5g57780.1 68418.m07223 expressed protein similar to unknown pr...    28   4.0  
At2g47115.1 68415.m05884 expressed protein                             27   7.0  
At2g27980.1 68415.m03391 expressed protein                             27   7.0  
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    27   9.3  
At3g11820.2 68416.m01448 syntaxin 121 (SYP121) / syntaxin-relate...    27   9.3  
At3g11820.1 68416.m01449 syntaxin 121 (SYP121) / syntaxin-relate...    27   9.3  
At2g28780.1 68415.m03499 expressed protein                             27   9.3  

>At3g55400.1 68416.m06153 methionyl-tRNA synthetase /
           methionine--tRNA ligase / MetRS (cpMetRS) identical to
           methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana]
           GI:2266985
          Length = 616

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 336 LHGSRAYLRTANTSLNNKHLSRARNRDQLDRSNPFY 229
           LH + ++L+  NT LN K  S  RN  +  +  P+Y
Sbjct: 9   LHNALSFLKPFNTPLNTKPFSFRRNSFRFSKKLPYY 44


>At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1)
           identical to GB:M90508 SP|P33154
          Length = 161

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +3

Query: 147 SPQLDMPVRNCCLGCQG--PMSGPCGPLAYRMDCCGQV-GPC-CVHARGAYCSNSCWRCG 314
           SPQ  + V N   G  G  PM       AY      Q+ G C  +H+ G Y  N  W  G
Sbjct: 29  SPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIHSGGPYGENLAWGSG 88

Query: 315 DMHG 326
           D+ G
Sbjct: 89  DLSG 92


>At4g30070.1 68417.m04277 plant defensin-fusion protein, putative
           contains a C-terminal plant defensin domain, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be)
          Length = 129

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 162 MPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSNSC 302
           +P+  C   C+ P S P  P      C G  G C    +G  C  +C
Sbjct: 61  VPLCKCYYECESPPSPPAPP----KKCDGGAGICSQRCQGQCCDMNC 103


>At2g14580.1 68415.m01633 pathogenesis-related protein, putative
           similar to SP|P33154 Pathogenesis-related protein 1
           precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
           profile PF00188: SCP-like extracellular protein
          Length = 161

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 195 GPMSGPCGPLAYRMDCCGQV-GPC-CVHARGAYCSNSCWRCGDMHG 326
           GPM    G  AY  +   Q+ G C  VH+RG Y  N     GD+ G
Sbjct: 47  GPMQWDEGLAAYARNYANQLKGDCRLVHSRGPYGENLAKSGGDLSG 92


>At5g57780.1 68418.m07223 expressed protein similar to unknown
           protein (emb CAB79759.1)
          Length = 167

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -2

Query: 393 LQCSLRYSRAHSCST--SRLLLHGSRAYLRTANTSLNNKHLSRARNRDQLDRSNPFYRPG 220
           L   L  + A + ST  SR L+  SR+  +TAN  +  + L +ARNR   +R N   R G
Sbjct: 42  LSSDLAMAAARNGSTVWSRALI--SRSGNKTANKPMARRILKKARNR-MKNRCNILRRNG 98

Query: 219 DRTGQT 202
           + T +T
Sbjct: 99  NFTAKT 104


>At2g47115.1 68415.m05884 expressed protein
          Length = 300

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
 Frame = +1

Query: 157 WTCLYVIAVWVVRGL--------CLARAVPWPIEWIAAVKLVPVAC 270
           W+CLYVI  W++            L    PW   W   + +V + C
Sbjct: 230 WSCLYVIFQWIIHACGFTWWPYPFLELDKPWAPIWYLCMAIVHIPC 275


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 180 CLGCQGPMSGPC 215
           CL CQGPM  PC
Sbjct: 494 CLSCQGPMIEPC 505


>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 157 WTCLYVIAVWVVRGLC 204
           WT LY IA+ V +G+C
Sbjct: 823 WTALYQIAIGVAQGIC 838


>At3g11820.2 68416.m01448 syntaxin 121 (SYP121) / syntaxin-related
           protein (SYR1) contains Pfam profiles: PF00804 syntaxin
           and PF05739:  SNARE domain; identical to cDNA
           syntaxin-related protein At-SYR1 (At-Syr1) GI:4206788,
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein At-Syr1) {Arabidopsis thaliana}
          Length = 315

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 136 FEVNRRNWTCL-YVIAVWVVRGLCLARAVPW 225
           ++ N R WTC+  +I + ++  + LA   PW
Sbjct: 248 YQKNTRKWTCIAIIILIIIITVVVLAVLKPW 278


>At3g11820.1 68416.m01449 syntaxin 121 (SYP121) / syntaxin-related
           protein (SYR1) contains Pfam profiles: PF00804 syntaxin
           and PF05739:  SNARE domain; identical to cDNA
           syntaxin-related protein At-SYR1 (At-Syr1) GI:4206788,
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein At-Syr1) {Arabidopsis thaliana}
          Length = 346

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 136 FEVNRRNWTCL-YVIAVWVVRGLCLARAVPW 225
           ++ N R WTC+  +I + ++  + LA   PW
Sbjct: 279 YQKNTRKWTCIAIIILIIIITVVVLAVLKPW 309


>At2g28780.1 68415.m03499 expressed protein
          Length = 796

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 320 ARLPWRSSRLVLQLWARLYRRLHWRALRFLLWSMVRINNVTQKKCESSQ 466
           AR+  RSS  + Q   R    + W  L F +W    +N+   +K +S +
Sbjct: 217 ARVLARSSSKLYQTLKRYQPSMTWERLPFKIWRWQNVNDNKGEKLQSME 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,543,294
Number of Sequences: 28952
Number of extensions: 206881
Number of successful extensions: 614
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)