Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a24
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 31 0.21
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 2.0
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 27 3.5
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 27 3.5
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 26 6.1
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 25 8.1
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 8.1
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.1
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 8.1
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +3
Query: 399 SSSDEEELSSGILKTR-KLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPS 575
+ SD L +G K+ K+SD K+ + I F + IK NVPS
Sbjct: 202 AESDNTILQNGTRKSSVKMSDLGKRIASLPVVKRPPIQFSISSDYIKPVDKSDQTSNVPS 261
Query: 576 PKTSGEVIQAQRASVKPGECKPPLPSKS 659
P +S ++ R+ P + + P P S
Sbjct: 262 PSSSVGSLRLYRSPSIPNDVEQPQPQSS 289
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 391 SNPVYPFLFFGTEGSREQCPIYRS 320
SN +Y FLF E EQ PIY S
Sbjct: 545 SNSIYFFLFAKDETVSEQAPIYNS 568
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 1 ETLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 180
+ L K+ V+C+ LN RN +K A + PS G+F +++QK +
Sbjct: 27 QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85
Query: 181 RPSL 192
R L
Sbjct: 86 RGML 89
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 1 ETLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 180
+ L K+ V+C+ LN RN +K A + PS G+F +++QK +
Sbjct: 27 QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85
Query: 181 RPSL 192
R L
Sbjct: 86 RGML 89
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 294 PMVPSMHTRLRYIGHCSLEPSVPKNRKGYTGFD 392
PMVP+ T +RYI S K++K G D
Sbjct: 49 PMVPNRATYIRYIHDLLSSTSGQKDKKRIIGLD 81
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 539 FSF*QVYFKCTQS*NEWRSNSSSKSIR*TRRV*TSFTLK 655
FS+ ++YF C S + S+++SK ++ R + T+ L+
Sbjct: 281 FSYAEIYFPCLHSFDAQLSSAASKCVQILRDIITNEELQ 319
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 8.1
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -1
Query: 549 QKLNALLLEPVSETLYPPVANRNTALFSCT--CRSVFL---FLKCH*IIPLHLKMMENRI 385
QK LL E + E L +T L + T C + + + + P + +ME +
Sbjct: 166 QKQPFLLPEVILEPLVMACQTNSTTLLTITLDCFAKLIDYNYFDSPTLNPSDITLMERVV 225
Query: 384 QYILSCFLVQKAPENNVQYTVV 319
I SCF + PE VQ +V
Sbjct: 226 NTIASCFCGESTPE-RVQLQIV 246
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 174 FLIHLYNLWFLKASVTWF 121
FLI L +WF A + WF
Sbjct: 393 FLISLLTVWFFPAGLFWF 410
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Frame = +3
Query: 375 GYTGFDFPSSSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIK-HSASD 551
G FD P + +G + + K RY L+P ++ T +K H
Sbjct: 685 GTESFDRPEDAGYVVTEAGFASDMGMEKFFNIKCRYSKLVPNTVVLVTTVKALKLHGGGP 744
Query: 552 KSILNVPSPK 581
K P P+
Sbjct: 745 KLKPGAPIPE 754
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,881
Number of Sequences: 5004
Number of extensions: 64576
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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