Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a24
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         31   1.2  
10_01_0127 - 1519803-1520036,1520802-1521095,1521840-1522614,152...    29   3.6  
12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140...    29   4.8  
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149...    28   6.4  
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112...    28   6.4  
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448...    28   6.4  
02_04_0142 + 20167876-20169108                                         28   8.4  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 507 MFPTPAPIIKHSASDKSILNVPSPKTSGEVIQA-QRASVKPGECKPP 644
           M P PAP IK   S  +    P P +SG + ++ +R    P + +PP
Sbjct: 490 MAPPPAPAIKGVTSPPAEYGAPPPPSSGWLPKSPERKKAPPPQAEPP 536


>10_01_0127 -
           1519803-1520036,1520802-1521095,1521840-1522614,
           1524574-1525412
          Length = 713

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 376 DILDSIFHHLQMKRNYLVAF*KQEN*ATSTRKKCGISICYRGI 504
           D++  +  H+  ++N++  F    N   S  K CG+  C RGI
Sbjct: 507 DMVLDLICHMSSQQNFITVFNDIGNITCSRNKTCGLIKCDRGI 549


>12_01_0190 -
           1404374-1404402,1404491-1404558,1404830-1404967,
           1405414-1405465,1405570-1405669,1406938-1407088,
           1407212-1407311,1407471-1407585,1407786-1407950,
           1408050-1408105,1408199-1408256
          Length = 343

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 211 PAISSSKVRASIISDTSLQSVVFESFRDLVF 119
           PA++ +   A ++  TSL S + ESF+ ++F
Sbjct: 59  PAVTEAAEPAEVVPRTSLASTIAESFKQMLF 89


>11_01_0189 -
           1493618-1493637,1493728-1493795,1494070-1494207,
           1494647-1494698,1494803-1494902,1495606-1495681,
           1495757-1495844,1496248-1496342,1496506-1496605,
           1496765-1496879,1497077-1497241,1497362-1497547
          Length = 400

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 211 PAISSSKVRASIISDTSLQSVVFESFRDLVF 119
           PA + +   A I+  TSL S + ESF+ ++F
Sbjct: 83  PAATEAAEPAEIVPRTSLASTIAESFKQMIF 113


>09_03_0130 -
           12609417-12610462,12610786-12611040,12611139-12611253,
           12611376-12611428,12611854-12612114,12612252-12612302,
           12612412-12612660,12612779-12613007,12613292-12613666
          Length = 877

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 388 NPVYPFLFFGTEGSREQCPIYRSLVCIEG 302
           NPVY +LFF T G +    +   ++CI G
Sbjct: 361 NPVYIYLFFQTNGIKAWSALGGCVLCITG 389


>05_05_0195 +
           23142830-23143714,23144288-23144314,23144657-23144866,
           23144976-23145242,23146290-23146376,23146495-23146553,
           23147166-23147768,23148063-23148192,23148570-23149100,
           23149636-23149743,23149911-23150456,23150957-23151079,
           23151494-23151709
          Length = 1263

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 525 PIIKHSASDKSILNVPSPKTSGEVIQAQRASVKPGECKPPLPSKSGYDLFKPHSGI 692
           P++ HS   ++ L  P    + E  Q +  +       P  P+K+G DLF    G+
Sbjct: 196 PVVGHSPDLRTFLTEPGAIPAFEGEQPRYWTTTLSSAAPSTPAKAGRDLFGMFKGL 251


>02_04_0142 + 20167876-20169108
          Length = 410

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = +3

Query: 120 KTKSRKLSKTTDCKDVS--EIIEALTLDEEMAGKSTRQPSRXXXXXXXXXXXXHNKESCV 293
           K  +  L + T C+ V   E++E + L  ++  ++ +  +             +  + C+
Sbjct: 170 KRMTEILGRGTACQVVEHPELLEGMRLSGKLKEEARKHLNSKHLHYEEMCSYHNRNKMCL 229

Query: 294 PMVPSMHTRLRYIGHCSLEPSVPKNRKGYTGFDFPSSSDEEE 419
              P++   LR +   S E    KN  GY   DF    DE+E
Sbjct: 230 FDDPALQKSLR-LALRSGEEHAKKNPFGYDDEDFSDDDDEDE 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,625,903
Number of Sequences: 37544
Number of extensions: 383554
Number of successful extensions: 1074
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)