Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a24
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 33 0.27
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 32 0.35
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 31 1.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 1.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 1.1
AF016666-7|AAB66087.1| 196|Caenorhabditis elegans Hypothetical ... 30 1.9
AL110484-4|CAB54396.2| 425|Caenorhabditis elegans Hypothetical ... 29 2.5
AF025470-3|AAB71057.1| 394|Caenorhabditis elegans Hypothetical ... 29 2.5
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr... 29 3.3
AC024818-4|AAF60782.5| 457|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 32.7 bits (71), Expect = 0.27
Identities = 28/104 (26%), Positives = 39/104 (37%)
Frame = +3
Query: 384 GFDFPSSSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSIL 563
G DF S D E + K + + K K DL D + P P A+ K
Sbjct: 1353 GIDFDSDDDGVEREDVVSKPKPRTGKGAAKAEVIDLSDDDEV-PAKKPAPAKKAAPKKKK 1411
Query: 564 NVPSPKTSGEVIQAQRASVKPGECKPPLPSKSGYDLFKPHSGIV 695
+ S + G+ + A KP K P P K+ +P S V
Sbjct: 1412 SEFSDLSGGD--SDEEAEKKPSTSKKPSPKKAAPKTAEPKSKAV 1453
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 32.7 bits (71), Expect = 0.27
Identities = 28/104 (26%), Positives = 39/104 (37%)
Frame = +3
Query: 384 GFDFPSSSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSIL 563
G DF S D E + K + + K K DL D + P P A+ K
Sbjct: 1353 GIDFDSDDDGVEREDVVSKPKPRTGKGAAKAEVIDLSDDDEV-PAKKPAPAKKAAPKKKK 1411
Query: 564 NVPSPKTSGEVIQAQRASVKPGECKPPLPSKSGYDLFKPHSGIV 695
+ S + G+ + A KP K P P K+ +P S V
Sbjct: 1412 SEFSDLSGGD--SDEEAEKKPSTSKKPSPKKAAPKTAEPKSKAV 1453
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 303 PSMHTRLRYIGHCSLEPSVPKNRKGYTGF-DFPSSSDEEELSSGILK 440
P T + Y H S PSV ++ + T F P++SDEEE+ G LK
Sbjct: 4618 PLRRTSITYTSHFS--PSVIRDLRSSTSFTSVPAASDEEEIVKGKLK 4662
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 130 DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 41
D+ G + T+ + LNFYDYD + L +F
Sbjct: 8632 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8661
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 130 DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 41
D+ G + T+ + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 130 DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 41
D+ G + T+ + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681
>AF016666-7|AAB66087.1| 196|Caenorhabditis elegans Hypothetical
protein B0281.1 protein.
Length = 196
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3
Query: 405 SDEEELSSGILKTRKLSDKYKKKVR 479
S+ E+L + +LKT+KL +K ++KVR
Sbjct: 91 SELEKLKTSLLKTKKLQEKLERKVR 115
>AL110484-4|CAB54396.2| 425|Caenorhabditis elegans Hypothetical
protein Y38E10A.5 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 543 LNALLLEPVSETLYPPVANRNTALFSCTCRSVFLFLKCH 427
++ LLL +SE YPPV L + C +F+ + H
Sbjct: 10 VSLLLLLTISEASYPPVCTSGFTLINGKCLRIFVDVSTH 48
>AF025470-3|AAB71057.1| 394|Caenorhabditis elegans Hypothetical
protein W10D9.3 protein.
Length = 394
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = -2
Query: 392 IESSISFPVFWYRRLQRTMSNIP*SRMHRRNHWNTAFFIMWRFKFFHFKLRRSR 231
+++S+ F V R++++ ++ + + N WN F+M KF +++ RS+
Sbjct: 124 LDNSMDFFVEIQRKMKKFDKSVSLEKKYMENDWNCFDFVMEYMKFTNYRNYRSK 177
>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
F21H12.6 protein.
Length = 1374
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 417 PLHLKMMENRIQYILSCFLVQKAPEN 340
P HL +++NR++ ++ LV + PEN
Sbjct: 1111 PDHLPLLQNRVKQLMQAKLVDQTPEN 1136
>AC024818-4|AAF60782.5| 457|Caenorhabditis elegans Hypothetical
protein Y54H5A.4 protein.
Length = 457
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +3
Query: 390 DFPSSSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNV 569
D + S+EE+ S + K + D Y D + D + I+K S +K++ +
Sbjct: 277 DVENRSEEEQWLSALSKGSVIGDDGGASGGYADRIVRDFVLENGGGIVKTSKLNKNMFST 336
Query: 570 PSPKTSGEVI 599
+GE++
Sbjct: 337 TVESEAGEIL 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,892
Number of Sequences: 27780
Number of extensions: 361577
Number of successful extensions: 1111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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