BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte11a24 (711 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogen... 32 0.43 At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 31 0.75 At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 30 1.3 At3g49940.1 68416.m05461 LOB domain protein 38 / lateral organ b... 29 4.0 At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila... 29 4.0 At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila... 29 4.0 At1g16020.2 68414.m01922 expressed protein 28 5.3 At1g16020.1 68414.m01921 expressed protein 28 5.3 At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma m... 28 7.0 At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma m... 28 7.0 At3g59150.1 68416.m06594 F-box family protein contains F-box dom... 27 9.3 At3g08800.1 68416.m01022 expressed protein 27 9.3 At1g80910.1 68414.m09493 expressed protein 27 9.3 >At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogenase family protein low similarity to NOGO-interacting mitochondrial protein from Mus musculus [gi:14522884]; contains Pfam profile: PF00107 zinc-binding dehydrogenases Length = 366 Score = 31.9 bits (69), Expect = 0.43 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +3 Query: 564 NVPSPKTS-GEV-IQAQRASVKPGECKPPLPSKSGYDLFKPHSGIVINRD 707 NVP P + EV ++A+ SV P +C+ + + G +F+PH I++ RD Sbjct: 51 NVPVPNLNPNEVLVKAKAVSVNPLDCR--IRAGYGRSVFQPHLPIIVGRD 98 >At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several putative ATP-dependent helicases Length = 1058 Score = 31.1 bits (67), Expect = 0.75 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%) Frame = +3 Query: 102 CKKCPPKTKSRKLSKTTDCKDVSEII--EALTLDEEMAGKSTR 224 C+KCPP+T K ++T C+ +E++ +A + ++ K+T+ Sbjct: 1016 CEKCPPETGCPKCAQTFGCRGYNELLHKKAAIMIMQVTKKNTK 1058 >At3g53680.1 68416.m05928 PHD finger transcription factor, putative predicted proteins, Arabidopsis thaliana Length = 839 Score = 30.3 bits (65), Expect = 1.3 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = +3 Query: 408 DEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPSPKTS 587 DEEEL S S+K + K D + +I P P+P++ +++S + I + P+ +S Sbjct: 32 DEEELYS--------SNKRQTKEPSNDDMKSEISNPVPSPVVDNASSFRDITSNPAKSSS 83 Query: 588 GE 593 G+ Sbjct: 84 GD 85 >At3g49940.1 68416.m05461 LOB domain protein 38 / lateral organ boundaries domain protein 38 (LBD38) identical to SP|Q9SN23 LOB domain protein 38 {Arabidopsis thaliana} Length = 247 Score = 28.7 bits (61), Expect = 4.0 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +3 Query: 342 SLEPSVPK--NRKGYTGFDFPSSSDEEELSSGILKTRKLSDKYKKKV 476 SL+P +P+ N G+ GF P+S + E+ + +L RK D + + Sbjct: 106 SLKP-IPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNI 151 >At1g75620.1 68414.m08786 glyoxal oxidase-related contains similarity to glyoxal oxidase precursor [Phanerochaete chrysosporium] gi|1050302|gb|AAA87594 Length = 547 Score = 28.7 bits (61), Expect = 4.0 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 415 SSSEDDGKSNPVYPFLFFGTEGS 347 S + D G N +YPF+F T+G+ Sbjct: 207 SETNDPGDENNLYPFVFLNTDGN 229 >At1g19900.1 68414.m02495 glyoxal oxidase-related contains similarity to glyoxal oxidase precursor [Phanerochaete chrysosporium] gi|1050302|gb|AAA87594 Length = 548 Score = 28.7 bits (61), Expect = 4.0 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -3 Query: 415 SSSEDDGKSNPVYPFLFFGTEGS 347 + + D G+ N +YPF+F T+G+ Sbjct: 203 AETHDQGQENNLYPFVFMNTDGN 225 >At1g16020.2 68414.m01922 expressed protein Length = 502 Score = 28.3 bits (60), Expect = 5.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 402 SSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPSPK 581 SS +E L + R+ + ++ + P D+ F T +I S + + SP+ Sbjct: 5 SSGDESLRLCMFDLRRGQTEGQELEKILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPE 64 Query: 582 TSGEVIQAQRASVKPGECKPPL 647 + EVI+A+R S E +P + Sbjct: 65 AACEVIEAERHSHVFYEAEPDI 86 >At1g16020.1 68414.m01921 expressed protein Length = 515 Score = 28.3 bits (60), Expect = 5.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 402 SSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPSPK 581 SS +E L + R+ + ++ + P D+ F T +I S + + SP+ Sbjct: 5 SSGDESLRLCMFDLRRGQTEGQELEKILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPE 64 Query: 582 TSGEVIQAQRASVKPGECKPPL 647 + EVI+A+R S E +P + Sbjct: 65 AACEVIEAERHSHVFYEAEPDI 86 >At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid envelope ATPase 1 (PEA1) identical to SP|Q37145 Calcium-transporting ATPase 1, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) {Arabidopsis thaliana}; identical to cDNA envelope Ca2+-ATPase (PEA1) chloroplast gene encoding chloroplast protein GI:509809 Length = 946 Score = 27.9 bits (59), Expect = 7.0 Identities = 9/18 (50%), Positives = 15/18 (83%) Frame = +3 Query: 456 DKYKKKVRYFDLLPGDIM 509 DK ++K+ +DLLPGD++ Sbjct: 245 DKLRQKISIYDLLPGDVV 262 >At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid envelope ATPase 1 (PEA1) identical to SP|Q37145 Calcium-transporting ATPase 1, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) {Arabidopsis thaliana}; identical to cDNA envelope Ca2+-ATPase (PEA1) chloroplast gene encoding chloroplast protein GI:509809 Length = 1020 Score = 27.9 bits (59), Expect = 7.0 Identities = 9/18 (50%), Positives = 15/18 (83%) Frame = +3 Query: 456 DKYKKKVRYFDLLPGDIM 509 DK ++K+ +DLLPGD++ Sbjct: 245 DKLRQKISIYDLLPGDVV 262 >At3g59150.1 68416.m06594 F-box family protein contains F-box domain Pfam:PF00646 Length = 509 Score = 27.5 bits (58), Expect = 9.3 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 226 NHLDRRSLK*KNLNRHIIKKAVFQWFLRCIRDYGILDIVL 345 +H+ R SLK + + V +W L +RD G+LD+ L Sbjct: 125 SHVQRVSLKCRQGG--VEPDCVIKWILTTVRDLGVLDLSL 162 >At3g08800.1 68416.m01022 expressed protein Length = 936 Score = 27.5 bits (58), Expect = 9.3 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 331 LDIVLWSL-LYQKTGKDILDSIFHHLQMKRNYLVAF*KQ 444 +D VL SL +Y + DIL ++FH Q N+LV+ K+ Sbjct: 426 IDGVLKSLEMYPQDEPDILSALFHFGQNHTNFLVSMVKR 464 >At1g80910.1 68414.m09493 expressed protein Length = 497 Score = 27.5 bits (58), Expect = 9.3 Identities = 21/82 (25%), Positives = 37/82 (45%) Frame = +3 Query: 402 SSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPSPK 581 SS E L + R+ + ++ + P D+ F T +I S + + SP+ Sbjct: 7 SSGTESLRLCVFDLRRGQHEGQELDKILFFYPPDLTFSTQLSVIGLSEGLITFTRLFSPE 66 Query: 582 TSGEVIQAQRASVKPGECKPPL 647 + EVI+A+R S E +P + Sbjct: 67 AACEVIEAERHSHVFYEAEPDI 88 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,613,335 Number of Sequences: 28952 Number of extensions: 331070 Number of successful extensions: 961 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 961 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1535986264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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