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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a24
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogen...    32   0.43 
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    31   0.75 
At3g53680.1 68416.m05928 PHD finger transcription factor, putati...    30   1.3  
At3g49940.1 68416.m05461 LOB domain protein 38 / lateral organ b...    29   4.0  
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila...    29   4.0  
At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila...    29   4.0  
At1g16020.2 68414.m01922 expressed protein                             28   5.3  
At1g16020.1 68414.m01921 expressed protein                             28   5.3  
At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma m...    28   7.0  
At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma m...    28   7.0  
At3g59150.1 68416.m06594 F-box family protein contains F-box dom...    27   9.3  
At3g08800.1 68416.m01022 expressed protein                             27   9.3  
At1g80910.1 68414.m09493 expressed protein                             27   9.3  

>At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogenase
           family protein low similarity to NOGO-interacting
           mitochondrial protein from Mus musculus [gi:14522884];
           contains Pfam profile: PF00107 zinc-binding
           dehydrogenases
          Length = 366

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 564 NVPSPKTS-GEV-IQAQRASVKPGECKPPLPSKSGYDLFKPHSGIVINRD 707
           NVP P  +  EV ++A+  SV P +C+  + +  G  +F+PH  I++ RD
Sbjct: 51  NVPVPNLNPNEVLVKAKAVSVNPLDCR--IRAGYGRSVFQPHLPIIVGRD 98


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
            putative ATP-dependent helicases
          Length = 1058

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +3

Query: 102  CKKCPPKTKSRKLSKTTDCKDVSEII--EALTLDEEMAGKSTR 224
            C+KCPP+T   K ++T  C+  +E++  +A  +  ++  K+T+
Sbjct: 1016 CEKCPPETGCPKCAQTFGCRGYNELLHKKAAIMIMQVTKKNTK 1058


>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
           predicted proteins, Arabidopsis thaliana
          Length = 839

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +3

Query: 408 DEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPSPKTS 587
           DEEEL S        S+K + K    D +  +I  P P+P++ +++S + I + P+  +S
Sbjct: 32  DEEELYS--------SNKRQTKEPSNDDMKSEISNPVPSPVVDNASSFRDITSNPAKSSS 83

Query: 588 GE 593
           G+
Sbjct: 84  GD 85


>At3g49940.1 68416.m05461 LOB domain protein 38 / lateral organ
           boundaries domain protein 38 (LBD38) identical to
           SP|Q9SN23 LOB domain protein 38 {Arabidopsis thaliana}
          Length = 247

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 342 SLEPSVPK--NRKGYTGFDFPSSSDEEELSSGILKTRKLSDKYKKKV 476
           SL+P +P+  N  G+ GF  P+S +  E+ + +L  RK  D   + +
Sbjct: 106 SLKP-IPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNI 151


>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 547

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 415 SSSEDDGKSNPVYPFLFFGTEGS 347
           S + D G  N +YPF+F  T+G+
Sbjct: 207 SETNDPGDENNLYPFVFLNTDGN 229


>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 548

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 415 SSSEDDGKSNPVYPFLFFGTEGS 347
           + + D G+ N +YPF+F  T+G+
Sbjct: 203 AETHDQGQENNLYPFVFMNTDGN 225


>At1g16020.2 68414.m01922 expressed protein
          Length = 502

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = +3

Query: 402 SSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPSPK 581
           SS +E L   +   R+   + ++  +     P D+ F T   +I  S    +   + SP+
Sbjct: 5   SSGDESLRLCMFDLRRGQTEGQELEKILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPE 64

Query: 582 TSGEVIQAQRASVKPGECKPPL 647
            + EVI+A+R S    E +P +
Sbjct: 65  AACEVIEAERHSHVFYEAEPDI 86


>At1g16020.1 68414.m01921 expressed protein
          Length = 515

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = +3

Query: 402 SSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPSPK 581
           SS +E L   +   R+   + ++  +     P D+ F T   +I  S    +   + SP+
Sbjct: 5   SSGDESLRLCMFDLRRGQTEGQELEKILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPE 64

Query: 582 TSGEVIQAQRASVKPGECKPPL 647
            + EVI+A+R S    E +P +
Sbjct: 65  AACEVIEAERHSHVFYEAEPDI 86


>At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 946

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 456 DKYKKKVRYFDLLPGDIM 509
           DK ++K+  +DLLPGD++
Sbjct: 245 DKLRQKISIYDLLPGDVV 262


>At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 1020

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 456 DKYKKKVRYFDLLPGDIM 509
           DK ++K+  +DLLPGD++
Sbjct: 245 DKLRQKISIYDLLPGDVV 262


>At3g59150.1 68416.m06594 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 509

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 226 NHLDRRSLK*KNLNRHIIKKAVFQWFLRCIRDYGILDIVL 345
           +H+ R SLK +     +    V +W L  +RD G+LD+ L
Sbjct: 125 SHVQRVSLKCRQGG--VEPDCVIKWILTTVRDLGVLDLSL 162


>At3g08800.1 68416.m01022 expressed protein
          Length = 936

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 331 LDIVLWSL-LYQKTGKDILDSIFHHLQMKRNYLVAF*KQ 444
           +D VL SL +Y +   DIL ++FH  Q   N+LV+  K+
Sbjct: 426 IDGVLKSLEMYPQDEPDILSALFHFGQNHTNFLVSMVKR 464


>At1g80910.1 68414.m09493 expressed protein
          Length = 497

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +3

Query: 402 SSDEEELSSGILKTRKLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNVPSPK 581
           SS  E L   +   R+   + ++  +     P D+ F T   +I  S    +   + SP+
Sbjct: 7   SSGTESLRLCVFDLRRGQHEGQELDKILFFYPPDLTFSTQLSVIGLSEGLITFTRLFSPE 66

Query: 582 TSGEVIQAQRASVKPGECKPPL 647
            + EVI+A+R S    E +P +
Sbjct: 67  AACEVIEAERHSHVFYEAEPDI 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,613,335
Number of Sequences: 28952
Number of extensions: 331070
Number of successful extensions: 961
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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