Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a23
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O58527 Cluster: Putative uncharacterized protein PH0797...    33   5.1  
UniRef50_Q8IFX6 Cluster: Putative uncharacterized protein; n=5; ...    33   8.8  

>UniRef50_O58527 Cluster: Putative uncharacterized protein PH0797;
           n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
           protein PH0797 - Pyrococcus horikoshii
          Length = 554

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 497 ISTPWSSETWDSAVFNSANSEKTLTPKSST--SYGATTPFFSVSSKNTLTLLESA 655
           ++T WS   W+S   N  N  K + P  ST  S+  T     ++SK    LL ++
Sbjct: 135 VNTSWSRLVWNSQSVNEINGWKIVIPNLSTNSSFPTTVDIIVINSKENANLLNNS 189


>UniRef50_Q8IFX6 Cluster: Putative uncharacterized protein; n=5;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 2232

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +2

Query: 506 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 640
           P SS T+ S    A  +S  S  T+ P SS++YG++TP  S SS  T++
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,500,355
Number of Sequences: 1657284
Number of extensions: 10435785
Number of successful extensions: 21722
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21661
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)