Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a23
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)               28   6.3  
SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)                    28   8.3  
SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
          Length = 351

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 199 CIETFLSTLQNYRWLINLADH 261
           C   +LS+L++Y WL +L DH
Sbjct: 279 CNHEWLSSLRDYEWLCSLRDH 299


>SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 512 SSETWDSAV-FNSANSEKTLTPKSSTSYGATTPFFSVSSKNTL 637
           ++ T D AV F +   ++ L   ++ SYGA+T  FS+ + N++
Sbjct: 4   NTSTRDIAVDFQTKRQKRKLRAATAASYGASTTQFSIGTVNSM 46


>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 527 DSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 673
           D+ ++N+A S        +TSY   TP+ S +S N  T    A S N +
Sbjct: 572 DATLYNNATS-----CNDATSYNNATPYNSATSYNNATSCNDATSYNNA 615


>SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)
          Length = 668

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 229 FVTSIKMFRYSCKYPFFIMDYQGIKCTYYL 140
           + TS + FR SC  P+F     G +CT  L
Sbjct: 470 YPTSRRSFRVSCVLPYFQAFLSGFRCTTVL 499


>SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 488 LSMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFF-SVSSKNTLTLLESAVSL 664
           L    +P+  ET++S   +S  S  T +  +STS  +  P   SV+S   ++  +S V +
Sbjct: 633 LPQCPSPYPKETYESTTTDSTKSATTYSSSNSTSLQSKGPVLDSVNSCTAVSADDSLVPI 692

Query: 665 N 667
           +
Sbjct: 693 S 693


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +2

Query: 497 ISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 673
           +S  ++  +  S    SA+ +KTLT  +STS     P  S+++ +    L++  +LN S
Sbjct: 225 VSKSFTEVSVSSNTTTSASVQKTLTTSASTSLAVAQPHTSLATSSNSQALKTE-TLNSS 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,438,015
Number of Sequences: 59808
Number of extensions: 352642
Number of successful extensions: 746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)