Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a21
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 318 QHDPAGRTGKSRGYKGHGQRENGRRKDSNAR 410
           Q+D      +  G K +  ++NG R++ N R
Sbjct: 485 QNDNKQNGNRQNGNKQNDNKQNGNRQNDNKR 515



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 318 QHDPAGRTGKSRGYKGHGQRENGRRKDSN 404
           Q+D      K  G + +  ++NG R++ N
Sbjct: 460 QNDNRQNDNKQNGNRQNDNKQNGNRQNDN 488



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 318 QHDPAGRTGKSRGYKGHGQRENGRRKDSN 404
           Q+D      +    K +G R+NG +++ N
Sbjct: 475 QNDNKQNGNRQNDNKQNGNRQNGNKQNDN 503


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +1

Query: 349  VEATRDTVRGRMVAEKIRTLEDLPEQLTVDLIKEEMLSQPEAK 477
            VEA R   RG M   +  +   +P       +KE  L +P  +
Sbjct: 1049 VEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKR 1091


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 385 VAEKIRTLEDLPEQLTVDLIKEEMLSQPEAKGFILVG 495
           + EK+     + +    D I  ++L++P A+G I+ G
Sbjct: 313 IKEKLVKDSGVAKDAAYDNIVLKLLTKPRARGCIIFG 349


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 70  NTYLYYAILPMYLNDFMKVL 129
           N+ +   ++P ++ DF+KVL
Sbjct: 118 NSAILKCVVPSFVADFVKVL 137


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 503 GTLGCQIYSV 532
           G LGCQI++V
Sbjct: 116 GNLGCQIFAV 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,394
Number of Sequences: 438
Number of extensions: 3585
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)