Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a18
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)           73   2e-13
SB_34713| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.071
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   2.0  
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)                   29   2.7  
SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.1  

>SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)
          Length = 141

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
 Frame = +3

Query: 453 LDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSAR-GSDFTEFRTQFSDDERAFGYLR 629
           +++E I  A  D+R++ +   WAVF ++ +  +C  + G ++ EF  +F + +RA+ Y+R
Sbjct: 4   VNKEQITEACVDIRNNDSENTWAVFTYDESNTICLHKSGKEYDEFLAEFDESDRAYAYVR 63

Query: 630 LQMGDEMSKRKKFMFMTW 683
           ++ GDE+S+R KF F+TW
Sbjct: 64  IETGDELSRRAKFAFITW 81


>SB_34713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
 Frame = +3

Query: 156 IDKLTDAQTLIITKFD-NLMANMN-ELREVLGGISDKIVLLEEGATDRRKLKADIQVLKT 329
           +  L+ +  L  TK   +  +N+N ++RE+   +      LE+   +  KLK  I  +K 
Sbjct: 66  VSSLSSSTELFQTKESGDPQSNLNTQVRELQIQVLSLTQALEDANRENTKLKQTILHIKN 125

Query: 330 RIDDLYAIVKDGKDSGSTDIQDVESCHSGFSNSSKVTM-TTG--LDRETIRAAYEDVRSD 500
              + +    D ++SG   + + E+CH G  +SS+  +   G   D E   + + D   D
Sbjct: 126 VTKEKFDFDFDEENSGQVCMVEQEACHKGEDSSSQTAVGNCGHCTDHEKDHSVHGD---D 182

Query: 501 TTPT 512
           T+PT
Sbjct: 183 TSPT 186


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +3

Query: 201  DNLM-ANMNELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRIDDLYAIVKDGKDSG 377
            DN++ A M +    LG + DK        +DRRK K    +L+   ++LY I K G +  
Sbjct: 2169 DNILDAGMEDTGHDLGEVGDK--------SDRRKKKEGNNLLQDTRNNLYKIFKKGGNDL 2220

Query: 378  STDIQDVES-CHSGFSNSSKVTMTTGLDRETIRAAY 482
               I D +S    G  N+     T  L  +  R  Y
Sbjct: 2221 HWSISDQKSKADDGCKNTKGRYATAWLQHKRDRGKY 2256


>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
          Length = 1134

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 279 LPPAKRFYQKYHREPHAIRSCLPLNYRI 196
           LPPA + Y ++H+ PH I S +    RI
Sbjct: 670 LPPALQEYHRFHQHPHTIDSVILYKDRI 697


>SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 429 SKVTMTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEG 539
           SK+ +     R  ++  ++D+    + T WAVF +EG
Sbjct: 68  SKMAIDLNKHRSELQKTWQDIFDGKSDTNWAVFGYEG 104


>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 351 IVKDGKDSGSTDIQDVESCHSGFSNSSKVTMTTGLDRETIRAAYEDV 491
           I+K  +     +  +V+  + G   S + T TT   RE +RAAY DV
Sbjct: 434 IIKS-RTQNKVECYEVQWINCGLGESCEPTFTTIETRELVRAAYPDV 479


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
 Frame = +3

Query: 147  QDQIDKLTDAQTL-----IITKFDNLMANMNELREVLGGISDKIVLLEEGA-------TD 290
            QD  D  TD   +     +I KF+NL  N+NE +E    ++DK  +  +          +
Sbjct: 2233 QDMKDDDTDGLAIQEMKQLIEKFENLQKNVNEKKEYFQRMADKWQMFSDQKHKMNSFFRN 2292

Query: 291  RRKLKADIQV-----LKTRIDDLYAIVKDGKDSGS 380
             R + A  Q+      K +I++  AI KD +D+GS
Sbjct: 2293 TRTIVAKRQLRSAEDCKKQIEECRAINKDLEDNGS 2327


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 571 SLPLAEHTIRAPSNLNTAHSVGVVSDL 491
           S PL +HT+RAP  + TA  +   SDL
Sbjct: 814 SCPLIQHTLRAPPMVTTAEELFCGSDL 840


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +3

Query: 156  IDKLTDAQTLIITKFDNLMANMNELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRI 335
            +D L DA T +    DN      E+++    I+ +   + EG  DR++  AD++VL   +
Sbjct: 2075 LDSLNDAATSLDALCDNAEVTQAEVKD----INKRWAAVLEGMADRKQHLADVRVLLAAL 2130

Query: 336  DDLYAIVKDGKDSGSTDIQ 392
                  V++  D  +  +Q
Sbjct: 2131 KATVEPVEELLDQAAPILQ 2149


>SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 165 LTDAQTLIITKFDNLMANMNELREVLGGISDKIVLLEE 278
           LT      + K DN  A ++EL+E +   + KI LLEE
Sbjct: 132 LTKDYERAVEKGDNFYAKIDELQEKVDDTTQKIKLLEE 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,850,994
Number of Sequences: 59808
Number of extensions: 466047
Number of successful extensions: 1361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)