Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a18
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81147-12|CAB03539.2| 494|Caenorhabditis elegans Hypothetical p... 31 0.77
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 30 1.8
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 29 2.3
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 29 3.1
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 29 4.1
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 29 4.1
U23510-9|AAC46781.1| 340|Caenorhabditis elegans Associated with... 29 4.1
Z50797-4|CAA90674.1| 339|Caenorhabditis elegans Hypothetical pr... 28 5.4
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC024840-2|AAX55682.1| 434|Caenorhabditis elegans Hypothetical ... 28 7.1
AC024840-1|AAF59619.2| 427|Caenorhabditis elegans Hypothetical ... 28 7.1
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 27 9.4
AC024852-4|AAT81182.1| 794|Caenorhabditis elegans Conserved oli... 27 9.4
AB212858-1|BAE66673.1| 792|Caenorhabditis elegans COGC-3 protein. 27 9.4
>Z81147-12|CAB03539.2| 494|Caenorhabditis elegans Hypothetical
protein T09E11.6 protein.
Length = 494
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 183 LIITKFDNLMANMNELREV---LGGISDKIVLLEEGATDRRKLKADIQVLKTRIDD 341
L++ D +M ++ E+ ++ LGG +D V E G D +KLK D LK I++
Sbjct: 246 LLLQNHDLIMKSVYEMEQIFEWLGGANDIFVTHEIGRVDVKKLKWDPMSLKLFINE 301
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 29.9 bits (64), Expect = 1.8
Identities = 31/131 (23%), Positives = 57/131 (43%)
Frame = +3
Query: 117 ADHVEGYKVFQDQIDKLTDAQTLIITKFDNLMANMNELREVLGGISDKIVLLEEGATDRR 296
A+H++ +V ++ + Q + L A + L++ L SD+ +LLE
Sbjct: 504 AEHID--QVRRNAEKDAMEQQKTYQNEMTQLKATIENLQKEL---SDRDILLESQNEKIG 558
Query: 297 KLKADIQVLKTRIDDLYAIVKDGKDSGSTDIQDVESCHSGFSNSSKVTMTTGLDRETIRA 476
+ D+ K R+DD A+V G D +DVE + K+ + + T+ A
Sbjct: 559 DMNRDLVQAKKRLDD--AMVDKGTDELR---RDVEGARNEVEKLLKMVHSLEKENLTLTA 613
Query: 477 AYEDVRSDTTP 509
+ ++ D TP
Sbjct: 614 QCKQLKRDDTP 624
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/163 (15%), Positives = 74/163 (45%)
Frame = +3
Query: 117 ADHVEGYKVFQDQIDKLTDAQTLIITKFDNLMANMNELREVLGGISDKIVLLEEGATDRR 296
++H E K+ Q QI+ L + + +++ A + E + + + +++ +DR
Sbjct: 228 SEHEESIKLLQSQIELLRQSHSQQLSEIQE--ARIFEEKMLTQQVDSA---MKKAKSDRE 282
Query: 297 KLKADIQVLKTRIDDLYAIVKDGKDSGSTDIQDVESCHSGFSNSSKVTMTTGLDRETIRA 476
KA QVL+ ++ +L +++ + + + ++ + ++ ++ + ++ A
Sbjct: 283 AAKAREQVLEKQVQELRLKLEEPDEEKNQLVHNLAALNAQIEELTQKALKVDSMQQGATA 342
Query: 477 AYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDD 605
+ + +R + A+ + E + + + D E +FS++
Sbjct: 343 SEDRIRELIGGHQEAIKQLENTKQMNESLQRDLVEKEARFSEE 385
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +3
Query: 468 IRAAYEDVRSDTTPTEWAVFKFEG----ARIVCSARGSDFTEFRTQFSDDERAFGYLRLQ 635
I A+Y D+ +W +F +EG R+ G EF FS + FG + ++
Sbjct: 12 IEASYRRASDDSDGDKWVIFDYEGNSNTLRVKEEGTGG-LEEFADSFSSGKLQFGVISVR 70
Query: 636 MGDEM 650
+ ++
Sbjct: 71 LSSDV 75
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/99 (23%), Positives = 38/99 (38%)
Frame = +3
Query: 222 NELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRIDDLYAIVKDGKDSGSTDIQDVE 401
+E+ L DK L+E D RK ++ K ++ KD ++ + +D E
Sbjct: 522 SEMESELSKFRDKCEQLKE---DLRKKSGELAQEKNETQRVFQQKKDADEAFAEIKRDYE 578
Query: 402 SCHSGFSNSSKVTMTTGLDRETIRAAYEDVRSDTTPTEW 518
+ N V + LD AY+ + T EW
Sbjct: 579 LLQTR-ENEKSVQLKKALDERKENGAYQQSVAKATDAEW 616
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/99 (23%), Positives = 38/99 (38%)
Frame = +3
Query: 222 NELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRIDDLYAIVKDGKDSGSTDIQDVE 401
+E+ L DK L+E D RK ++ K ++ KD ++ + +D E
Sbjct: 522 SEMESELSKFRDKCEQLKE---DLRKKSGELAQEKNETQRVFQQKKDADEAFAEIKRDYE 578
Query: 402 SCHSGFSNSSKVTMTTGLDRETIRAAYEDVRSDTTPTEW 518
+ N V + LD AY+ + T EW
Sbjct: 579 LLQTR-ENEKSVQLKKALDERKENGAYQQSVAKATDAEW 616
>U23510-9|AAC46781.1| 340|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 5 protein.
Length = 340
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/94 (25%), Positives = 43/94 (45%)
Frame = +3
Query: 234 EVLGGISDKIVLLEEGATDRRKLKADIQVLKTRIDDLYAIVKDGKDSGSTDIQDVESCHS 413
++ I ++ LE+G R++ KAD + + + +KDGK+ D V+
Sbjct: 256 DIFYNIMSDLLKLEKGENSRKR-KADCDLNASTVK-----IKDGKEEEEGDQDQVDE--- 306
Query: 414 GFSNSSKVTMTTGLDRETIRAAYEDVRSDTTPTE 515
GF +K T + + A E+ S +TP+E
Sbjct: 307 GFVIVNKPTEDEVKEEKPAVTAAEESASSSTPSE 340
>Z50797-4|CAA90674.1| 339|Caenorhabditis elegans Hypothetical
protein T22H6.3 protein.
Length = 339
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 480 YEDVRSDTTPTEWAVFKFEGARIVCSARGSDFT 578
Y+ +DTTP W +F+ G I C S F+
Sbjct: 184 YKSPDTDTTPAHWNLFQLFGLAICCVIMTSCFS 216
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/80 (17%), Positives = 34/80 (42%)
Frame = +3
Query: 291 RRKLKADIQVLKTRIDDLYAIVKDGKDSGSTDIQDVESCHSGFSNSSKVTMTTGLDRETI 470
+RK++ D+Q+L++ I++ + K + I D + + ++T+
Sbjct: 1737 KRKVEGDLQLLQSEIEEAMSDAKTSDEKAKKAIMDASKLADELRSEQEHASNLNQSKKTL 1796
Query: 471 RAAYEDVRSDTTPTEWAVFK 530
+ +D++ E A K
Sbjct: 1797 ESQVKDLQMRLDEAEAAGIK 1816
>AC024840-2|AAX55682.1| 434|Caenorhabditis elegans Hypothetical
protein Y59H11AL.1b protein.
Length = 434
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 259 LSEIPPRTSRNSFMFAIK-LSNLVMISVWASVSLSI*SWKTL*PSTWSANGLAMFQTFVI 83
+ ++ P S +FA+ L L++I+V I SW + W A+GLAM + V
Sbjct: 273 VKKLVPMVILISALFALCWLPLLILINVIPEFYPDINSWGYILYLWWFAHGLAMSHSMVN 332
Query: 82 KIMDFLSGNRMK 47
I+ F+ R +
Sbjct: 333 PIIYFIRNARFR 344
>AC024840-1|AAF59619.2| 427|Caenorhabditis elegans Hypothetical
protein Y59H11AL.1a protein.
Length = 427
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 259 LSEIPPRTSRNSFMFAIK-LSNLVMISVWASVSLSI*SWKTL*PSTWSANGLAMFQTFVI 83
+ ++ P S +FA+ L L++I+V I SW + W A+GLAM + V
Sbjct: 273 VKKLVPMVILISALFALCWLPLLILINVIPEFYPDINSWGYILYLWWFAHGLAMSHSMVN 332
Query: 82 KIMDFLSGNRMK 47
I+ F+ R +
Sbjct: 333 PIIYFIRNARFR 344
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +1
Query: 526 SSLKAPG*CARPGVATSRSSARS------SLMMNAHSDTSGCR 636
S L+AP AR G +SRSS R SL +++ DTSGCR
Sbjct: 193 SPLRAPLRAAR-GSESSRSSTRGGGGGGESLTISSRVDTSGCR 234
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +1
Query: 526 SSLKAPG*CARPGVATSRSSARS------SLMMNAHSDTSGCR 636
S L+AP AR G +SRSS R SL +++ DTSGCR
Sbjct: 301 SPLRAPLRAAR-GSESSRSSTRGGGGGGESLTISSRVDTSGCR 342
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -3
Query: 625 RYPNARSSSENCVRNSVKSLPLA-----EHTIRAPSNLNTAHSVGVVSD 494
RYP R ++ +R+ KSLP EH +R P + N+ + SD
Sbjct: 1394 RYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVRRPHSRNSYSNESTSSD 1442
>Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical
protein F17E5.2 protein.
Length = 531
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 240 LGGISDKIVLLEEGATDRRKLKADIQVLKTRIDDLYA--IVKDGKDSGSTDI 389
L + DKI L +G D ++K+ + + +DD A IVK SGS+ +
Sbjct: 141 LAEVFDKIDLNSDGEVDMAEIKSYCKEMGVNLDDQKAMSIVKKMDQSGSSSV 192
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 519 AVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLR 629
A FKF G +I+ S+R FT++ + + RA G LR
Sbjct: 155 AKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLR 191
>AC024852-4|AAT81182.1| 794|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 3, isoform a
protein.
Length = 794
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +3
Query: 195 KFDNLMANMNELREVLGGISDKIVLLEEGA----TDRRKLKADIQVLKTRI 335
+ DN A MNELRE +S + L + ++ L Q++KT +
Sbjct: 79 QIDNSKATMNELREAYESVSSRTCSLHDACDRALAEQTSLSTGSQLIKTNL 129
>AB212858-1|BAE66673.1| 792|Caenorhabditis elegans COGC-3 protein.
Length = 792
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +3
Query: 195 KFDNLMANMNELREVLGGISDKIVLLEEGA----TDRRKLKADIQVLKTRI 335
+ DN A MNELRE +S + L + ++ L Q++KT +
Sbjct: 79 QIDNSKATMNELREAYESVSSRTCSLHDACDRALAEQTSLSTGSQLIKTNL 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,494
Number of Sequences: 27780
Number of extensions: 342311
Number of successful extensions: 963
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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