Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a18
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase, ...    31   0.94 
At5g28270.1 68418.m03430 hypothetical protein similar to At2g121...    29   2.2  
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ...    29   3.8  
At5g41310.1 68418.m05020 kinesin motor protein-related                 28   5.0  
At4g32320.1 68417.m04597 peroxidase family protein similar to L-...    28   5.0  
At4g02640.2 68417.m00359 bZIP transcription factor family protei...    28   5.0  
At4g02640.1 68417.m00358 bZIP transcription factor family protei...    28   5.0  
At3g43400.1 68416.m04593 phagocytosis and cell motility protein ...    28   5.0  
At2g03520.1 68415.m00312 expressed protein similar to SP|Q41706 ...    28   5.0  
At5g48210.1 68418.m05956 expressed protein                             28   6.6  
At4g33750.1 68417.m04792 expressed protein                             28   6.6  
At2g40070.1 68415.m04923 expressed protein                             28   6.6  
At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ...    28   6.6  
At3g54620.1 68416.m06043 bZIP transcription factor family protei...    27   8.8  

>At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative 65% similar to
           geranylgeranyl pyrophosphate synthase [GI:413730];
          Length = 326

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 662 LAFRHLVSHLQPEVSECAFIIRELRAELREVATPGRA 552
           LAF+H+VSH  P++   A I+R +    R V + G A
Sbjct: 163 LAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMA 199


>At5g28270.1 68418.m03430 hypothetical protein similar to At2g12100,
           At2g05450, At1g45090, At2g16180, At2g06750
          Length = 574

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/75 (24%), Positives = 37/75 (49%)
 Frame = +3

Query: 15  VTIKLGHKAKFFIRFPLRKSIILMTKV*NMASPFADHVEGYKVFQDQIDKLTDAQTLIIT 194
           +T++L     FF ++P R++  L+T          D    +K  +  I+KL +  T + T
Sbjct: 220 MTVELTKNLNFFCKYPWRRTSFLLT---------LDRCTSFKEGETDIEKLRNEDTAVFT 270

Query: 195 KFDNLMANMNELREV 239
             +  + N+++LR +
Sbjct: 271 --ERTIKNLSKLRPI 283


>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 165 LTDAQTLIITKFDNLMAN-MNELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRIDD 341
           L D + L+    D + +  +N+LR    G+   +  L    TDR K+ +DI+ +  RI D
Sbjct: 62  LEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITKRISD 121

Query: 342 L 344
           +
Sbjct: 122 V 122


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 377 TGVLAVFDYSVQIIDPSLQDLNVCLQFTSIGRSFLQ-QNDFIRNTTENLTQFVHVCH*II 201
           T   ++FD   +++D S Q +NV   + SI R  +Q     I N  ENL    ++   + 
Sbjct: 181 TSTRSLFDMLDRLLDESSQKMNVSHVYVSILRGIVQVVEQRISNQAENLKN-QNILFRVR 239

Query: 200 EFSYDQRLGICQ 165
           E  Y  R+ + +
Sbjct: 240 EEKYRSRINVLE 251


>At4g32320.1 68417.m04597 peroxidase family protein similar to
           L-ascorbate peroxidase [Arabidopsis thaliana]
           gi|1523789|emb|CAA66925; contains Pfam profile PF00141:
           Peroxidase
          Length = 329

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 647 LVSHLQPEVSECAFIIRELRAELREVATPGRAHYPGAFKLEHRPLGRCSVGPH 489
           L+SH+ P+    A I   ++ E+R+V T G+A   G  +L     G   +  H
Sbjct: 83  LLSHMLPQNGNAAEIYPVMQNEIRKVVTKGKA--AGVLRLVFHDAGTFELDDH 133


>At4g02640.2 68417.m00359 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 417

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/98 (24%), Positives = 44/98 (44%)
 Frame = +3

Query: 192 TKFDNLMANMNELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRIDDLYAIVKDGKD 371
           T+ ++L    + L + L  ++ K    +E A   R LKADI+ L+ ++      VK  + 
Sbjct: 251 TQVNDLKGEHSSLLKQLSNMNHKY---DEAAVGNRILKADIETLRAKVKMAEETVK--RV 305

Query: 372 SGSTDIQDVESCHSGFSNSSKVTMTTGLDRETIRAAYE 485
           +G   +    S     +N   +T    +D  +I  AY+
Sbjct: 306 TGMNPMLLGRSSGHNNNNRMPITGNNRMDSSSIIPAYQ 343


>At4g02640.1 68417.m00358 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 411

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/98 (24%), Positives = 44/98 (44%)
 Frame = +3

Query: 192 TKFDNLMANMNELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRIDDLYAIVKDGKD 371
           T+ ++L    + L + L  ++ K    +E A   R LKADI+ L+ ++      VK  + 
Sbjct: 245 TQVNDLKGEHSSLLKQLSNMNHKY---DEAAVGNRILKADIETLRAKVKMAEETVK--RV 299

Query: 372 SGSTDIQDVESCHSGFSNSSKVTMTTGLDRETIRAAYE 485
           +G   +    S     +N   +T    +D  +I  AY+
Sbjct: 300 TGMNPMLLGRSSGHNNNNRMPITGNNRMDSSSIIPAYQ 337


>At3g43400.1 68416.m04593 phagocytosis and cell motility protein
           ELMO1-related contains weak similarity to ELMO1 [Mus
           musculus] gi|16118551|gb|AAL14464
          Length = 213

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 336 DDLYAIVKDGKDSGSTDIQDVESCHSGFSNSSKVTMTTGLDRETIRAAYEDVRSDTTPTE 515
           + L  ++ +G D+G+  ++D+ SC     N   + M   +  E I A  ED    +TP+ 
Sbjct: 5   NSLGKLMNNGADNGAF-LRDLASCSCRDLNLENLNMFLFVYTELINADAEDASCSSTPS- 62

Query: 516 WAVFK 530
           W + K
Sbjct: 63  WRIKK 67


>At2g03520.1 68415.m00312 expressed protein similar to SP|Q41706 A3
           protein (unknown function) {Vigna unguiculata}
          Length = 388

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
 Frame = +3

Query: 81  LMTKV*NMASPFADHVEGYKVFQDQIDKLTDAQTLII-TKFDNLMANMNELREVL-GGIS 254
           ++  + N+A+ +A    G  V     + +T + T++I T  +  + N     E+L  G+ 
Sbjct: 80  VLLSIGNLATQYAFAFVGLSV----TEVITASITVVIGTTLNYFLDNKINKAEILFPGVG 135

Query: 255 DKIVLLEEGATDRRKLKADI-QVLKTR-IDDLYAIVKDGKDSGSTDIQDVES 404
             ++ +  GA       AD+ + LK+   +DLY+ +++G+D    +  DVES
Sbjct: 136 CFLIAVFLGAAVHASNAADVKEKLKSLPSEDLYSSIENGEDKPEIEKTDVES 187


>At5g48210.1 68418.m05956 expressed protein
          Length = 103

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -1

Query: 315 ECLPSVYVYRSLLPPAKR 262
           EC+P ++++  L+PP++R
Sbjct: 74  ECIPQMFIFAPLIPPSRR 91


>At4g33750.1 68417.m04792 expressed protein 
          Length = 148

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 117 ADHVEGYKVFQDQIDKLTDAQTL 185
           AD+  G  + Q+++D LTD QTL
Sbjct: 103 ADNTSGTSISQEEMDALTDPQTL 125


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 511 PSGRCSSLKAPG*CARPGVATSR---SSARSSLMMNAHSDTSGCRWETRCLNARNLCS*R 681
           P+GR S+L A    +RP   TSR   SSA    + N+ S  S     T    + +L S R
Sbjct: 189 PTGRSSTLTANSKSSRPSTPTSRATVSSATRPSLTNSRSTVSATTKPTPMSRSTSLSSSR 248


>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 MNELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRIDDL 344
           +NELR    GI  ++  L     DRRK  +DI+ +  RI ++
Sbjct: 81  LNELRGKEKGIKKQVRTLACFLVDRRKFASDIEGITKRISEV 122


>At3g54620.1 68416.m06043 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 403

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 189 ITKFDNLMANMN-ELREVLGGISDKIVLLEEGATDRRKLKADIQVLKTRI 335
           + +FD  +  +  E   ++  +SD     +  A D R L+ADI+ L+T++
Sbjct: 254 MNEFDTQVGQLRAEHSTLINRLSDMNHKYDAAAVDNRILRADIETLRTKV 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,153,492
Number of Sequences: 28952
Number of extensions: 319060
Number of successful extensions: 947
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)