Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a17
         (378 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54H58 Cluster: Putative uncharacterized protein; n=1; ...    32   3.1  
UniRef50_A6RBF3 Cluster: Predicted protein; n=1; Ajellomyces cap...    31   7.1  
UniRef50_UPI00006CB2DA Cluster: Viral A-type inclusion protein r...    31   9.4  

>UniRef50_Q54H58 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 223

 Score = 32.3 bits (70), Expect = 3.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 144 KQSSIEPMKLKNSGMYGVFFMLFFAFLINCXQGNNTNNI 28
           KQS IE +K+ N+    +FF++ F    N    NN NNI
Sbjct: 20  KQSKIEMIKINNNSTQ-IFFLINFNHTYNSNNNNNYNNI 57


>UniRef50_A6RBF3 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 702

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 259 HQRFXTADSPLXVMDSREEAAALHERFVEYVHTLSD 366
           HQ   TA  P+ ++DSR    +L E F++Y+    D
Sbjct: 52  HQNLDTASWPVQILDSRAAYQSLREYFLKYIQHPDD 87


>UniRef50_UPI00006CB2DA Cluster: Viral A-type inclusion protein
           repeat containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Viral A-type inclusion protein repeat
           containing protein - Tetrahymena thermophila SB210
          Length = 2199

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 205 RTDDFHSQLELMATITSNHQRFXTADSPLXVMDSREEAAALHERFVEYVHTLSDPNEI 378
           + ++ + + ++M+T   + +     DS L   +  ++   L E+  +YV T+ D NEI
Sbjct: 487 KLNEKNEKFDIMSTSIVSTESLSVRDSDLKTTEYIKKIKILEEQIKDYVETIKDKNEI 544


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,913,477
Number of Sequences: 1657284
Number of extensions: 5353162
Number of successful extensions: 10808
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10806
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)